Co-expression analysis

Gene ID	Ta.5873.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g12500: ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) (HF=5e-1)
Module size	6 genes
NF	0.21
%ile	36.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.99	Ta.5873.1.S1_x_at	CD910379	-	-	5e-1	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.67	86.3	1.00	TaAffx.133698.1.A1_s_at	BJ296326	-	-	1e+0	At2g43570	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.98	Ta.23888.2.S1_x_at	CD909855	-	-	6e-1	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.50	72.4	1.00	Ta.5839.1.S1_at	BJ291864	-	-	9e-2	At3g05675	protein binding	O.I.	H.G.	S.X.	Please select
0.08	9.4	1.00	Ta.5839.1.S1_x_at	BJ291864	-	-	9e-2	At3g05675	protein binding	O.I.	H.G.	S.X.	Please select
0.06	7.6	1.00	Ta.24114.10.S1_x_at	BJ242919	Pre-alpha-/beta-gliadin A-III	-	3e+0	At1g43850	SEU (seuss)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
60.6	99.9	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
60.3	99.9	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
57.6	99.9	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
8.9	99.0	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
7.5	98.6	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
5.7	97.9	GSM315202	target strand labeled: Sense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
5.6	97.8	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.9	97.3	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.7	97.1	GSM139915	Anther pre-meiosis rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.6	97.0	GSM139916	Anther leptotene-pachytene rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the barley gene, Contig2517_s_at, orthologous to the query gene, Ta.5873.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig2517_s_at	At3g12500	-	-	2e-6	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.67	84.7	EBpi05_SQ001_N05_at	At3g12500	-	-	3e+0	At2g29654	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig11079_at	At3g12500	-	-	9e-9	At3g26420	ATRZ-1A	O.I.	H.G.	S.X.	Please select
0.63	80.3	Contig23178_at	At3g12500	-	-	1e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	Contig2590_at	At3g12500	-	-	4e-32	At3g12390	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	HVSMEa0008P17r2_at	At3g12500	-	-	4e+0	At5g66040	STR16 (SULFURTRANSFERASE PROTEIN 16)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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