Co-expression analysis

Gene ID	Ta.5873.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g12500: ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) (HF=5e-1)
Module size	6 genes
NF	0.21
%ile	36.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.99	Ta.5873.1.S1_x_at	CD910379	-	-	5e-1	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.67	86.3	1.00	TaAffx.133698.1.A1_s_at	BJ296326	-	-	1e+0	At2g43570	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.98	Ta.23888.2.S1_x_at	CD909855	-	-	6e-1	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.50	72.4	1.00	Ta.5839.1.S1_at	BJ291864	-	-	9e-2	At3g05675	protein binding	O.I.	H.G.	S.X.	Please select
0.08	9.4	1.00	Ta.5839.1.S1_x_at	BJ291864	-	-	9e-2	At3g05675	protein binding	O.I.	H.G.	S.X.	Please select
0.06	7.6	1.00	Ta.24114.10.S1_x_at	BJ242919	Pre-alpha-/beta-gliadin A-III	-	3e+0	At1g43850	SEU (seuss)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
60.6	99.9	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
60.3	99.9	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
57.6	99.9	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
8.9	99.0	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
7.5	98.6	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
5.7	97.9	GSM315202	target strand labeled: Sense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
5.6	97.8	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.9	97.3	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.7	97.1	GSM139915	Anther pre-meiosis rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.6	97.0	GSM139916	Anther leptotene-pachytene rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the soybean gene, Gma.2833.1.S1_s_at, orthologous to the query gene, Ta.5873.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	Gma.2833.1.S1_s_at	At3g12500	chitinase class I	-	9e-3	At4g01700	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.57	78.8	Gma.2523.1.S1_s_at	At3g12500	-	-	4e-1	At2g15220	secretory protein, putative	O.I.	H.G.	S.X.	Please select
0.50	71.7	GmaAffx.91442.1.S1_at	At3g12500	stress-induced protein SAM22-like /// pathogenesis-related protein PR-10	-	1e-1	At4g32950	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.50	71.7	GmaAffx.91396.1.S1_at	At3g12500	-	-	7e-2	At1g06250	lipase class 3 family protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.5264.1.S1_s_at	At3g12500	Kunitz trypsin inhibitor /// Kunitz trypsin inhibitor p20-1-like protein /// trypsin inhibitor p20	-	3e+0	At2g23990	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.15	18.7	GmaAffx.91944.1.S1_s_at	At3g12500	NAD(P)H dependent 6'-deoxychalcone synthase	-	4e-2	At4g37690	galactosyl transferase GMA12/MNN10 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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