Co-expression analysis

Gene ID Ta.5839.1.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At3g05675: protein binding (HF=9e-2)
Module size 43 genes
NF 0.86
%ile 98.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9498.91.00Ta.5839.1.S1_x_atBJ291864--9e-2At3g05675protein bindingO.I.H.G.S.X.
0.9599.11.00Ta.131.1.S1_atBE430809low-molecular-weight glutenin storage protein-7e-1At3g46613RTFL4 (ROTUNDIFOLIA LIKE 4)O.I.H.G.S.X.
0.9498.91.00Ta.24114.11.S1_x_atBJ237788Alpha/beta-gliadin precursor-3e+0At5g53590auxin-responsive family proteinO.I.H.G.S.X.
0.9498.91.00Ta.1257.2.A1_x_atBJ242255--7e-1At1g54830NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)O.I.H.G.S.X.
0.9398.71.00Ta.160.1.S1_x_atU86028.1pre-gamma-gliadin B-I-7e-1At5g62575unknown proteinO.I.H.G.S.X.
0.9398.71.00Ta.19.1.S1_atCD902219wheat type V thionin-2e+0At5g07600oleosin / glycine-rich proteinO.I.H.G.S.X.
0.9398.71.00Ta.24114.18.S1_x_atBJ239750--1e+0At5g10520RBK1 (Rop Binding protein Kinases 1)O.I.H.G.S.X.
0.9298.51.00Ta.23142.7.S1_x_atBQ244524--9e-3At5g61270PIF7 (PHYTOCHROME-INTERACTING FACTOR7)O.I.H.G.S.X.
0.9298.51.00Ta.24963.1.S1_x_atBJ241536HMW glutenin-1e+0At5g65790MYB68 (MYB DOMAIN PROTEIN 68)O.I.H.G.S.X.
0.9298.51.00Ta.24114.14.S1_x_atBJ241838Gamma-gliadin /// Gamma-gliadin-3e+0At3g20865AGP40 (arabinogalactan-protein 40)O.I.H.G.S.X.
0.9198.21.00Ta.2448.1.S1_atBJ237853--6e-1At4g12050DNA-binding protein-relatedO.I.H.G.S.X.
0.9094.81.00Ta.6699.1.S1_atM11076.1pre-alpha-/beta-gliadin A-III-2e-1At1g49010myb family transcription factorO.I.H.G.S.X.
0.9094.81.00Ta.117.1.S1_atCD914973serpin-7e-1At1g17650GLYR2 (GLYOXYLATE REDUCTASE 2)O.I.H.G.S.X.
0.8994.61.00Ta.23141.1.S1_atBJ235767puroindoline-a-2e+0At4g29430rps15ae (ribosomal protein S15A E)O.I.H.G.S.X.
0.8994.61.00Ta.23142.11.S1_x_atBJ242011Low molecular weight glutenin subunit-5e-1At4g31580SRZ-22O.I.H.G.S.X.
0.8894.41.00Ta.14625.2.S1_x_atBQ806669--2e-1At5g18550nucleic acid binding / zinc ion bindingO.I.H.G.S.X.
0.8794.21.00Ta.14625.1.S1_x_atBJ242520lmw-gs-3e+0At3g20865AGP40 (arabinogalactan-protein 40)O.I.H.G.S.X.
0.8794.21.00Ta.27780.1.S1_x_atCD916747beta amylase-2e-2At4g15210BAM5 (BETA-AMYLASE 5)O.I.H.G.S.X.
0.8694.11.00Ta.6175.1.S1_atCD906599--6e+0At5g66300NAC105 (NAC DOMAIN CONTAINING PROTEIN 105)O.I.H.G.S.X.
0.8593.81.00Ta.27778.6.S1_x_atBJ232514Alpha/beta-gliadin precursor-4e-2At1g49010myb family transcription factorO.I.H.G.S.X.
0.8593.81.00Ta.6175.1.S1_x_atCD906599--6e+0At5g66300NAC105 (NAC DOMAIN CONTAINING PROTEIN 105)O.I.H.G.S.X.
0.8493.61.00TaAffx.52381.1.S1_atCA708355--1e+0At5g22530unknown proteinO.I.H.G.S.X.
0.8493.61.00Ta.28632.1.S1_x_atM16060.1gamma-gliadin-3e-2At1g18750AGL65 (AGAMOUS-LIKE 65)O.I.H.G.S.X.
0.8493.61.00Ta.24114.1.S1_x_atM10092.1pre-alpha-/beta-gliadin A-II-3e+0At5g53590auxin-responsive family proteinO.I.H.G.S.X.
0.8493.61.00Ta.115.1.S1_atCD453742puroindoline-b-6e+0At5g64950mitochondrial transcription termination factor-related / mTERF-relatedO.I.H.G.S.X.
0.8493.61.00Ta.1308.1.S1_x_atCD918842beta purothionin precursor-1e-1At4g14550IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)O.I.H.G.S.X.
0.8393.41.00Ta.1304.1.S1_atCA717552serine proteinase inhibitor-like allergen-6e+0At2g47690NADH-ubiquinone oxidoreductase-relatedO.I.H.G.S.X.
0.8393.41.00Ta.23142.8.S1_x_atBJ235564low molecular weight glutenin /// low molecular weight glutenin /// low molecular weight glutenin /// low molecular weight glutenin /// low-molecular-weight glutenin storage protein-2e-1At1g74055unknown proteinO.I.H.G.S.X.
0.8292.71.00Ta.5873.2.S1_atCD902597--5e-1At3g23830GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)O.I.H.G.S.X.
0.8292.71.00Ta.1308.1.S1_atCD918842beta purothionin precursor-1e-1At4g14550IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)O.I.H.G.S.X.
0.8292.71.00Ta.9799.1.S1_atBQ805009--3e-1At3g60440-O.I.H.G.S.X.
0.8292.71.00Ta.24298.1.S1_x_atBT008927.1--1e+0At4g15950NRPD4O.I.H.G.S.X.
0.8192.41.00Ta.24114.8.S1_x_atBJ238810Gamma-gliadin-7e-1At3g13810AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11)O.I.H.G.S.X.
0.8192.41.00TaAffx.128418.2.S1_x_atBJ237448gamma-gliadin /// gamma-gliadin /// gamma-gliadin-2e+0At3g42150unknown proteinO.I.H.G.S.X.
0.8192.41.00TaAffx.4219.1.S1_atCA715111--4e+0At3g27410unknown proteinO.I.H.G.S.X.
0.8192.41.00Ta.30782.9.S1_x_atBJ237631Gamma-gliadin-8e-1At3g20865AGP40 (arabinogalactan-protein 40)O.I.H.G.S.X.
0.8092.21.00Ta.27780.2.A1_x_atBJ243011--6e+0At5g15940binding / catalytic/ oxidoreductaseO.I.H.G.S.X.
0.7991.31.00Ta.27780.3.S1_x_atCD897313--5e+0At5g54740protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.7891.11.00Ta.27780.2.A1_a_atBJ243011--6e+0At5g15940binding / catalytic/ oxidoreductaseO.I.H.G.S.X.
0.7589.81.00Ta.23141.2.S1_atCD905119Alpha-amylase inhibitor 0.19-6e+0At4g35450AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2)O.I.H.G.S.X.
0.7489.41.00Ta.24969.1.S1_s_atU86030.1low-molecular-weight glutenin storage protein-7e-1At3g61240DEAD/DEAH box helicase, putative (RH12)O.I.H.G.S.X.
0.7389.11.00Ta.13254.1.S1_x_atBJ240159HMW glutenin-1e+0At5g65790MYB68 (MYB DOMAIN PROTEIN 68)O.I.H.G.S.X.
0.7288.31.00Ta.24114.12.S1_x_atBJ242193--1e+0At5g10520RBK1 (Rop Binding protein Kinases 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
58.499.9GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
56.899.9GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
56.199.9GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
9.299.0GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
4.997.3GSM314284tissue type: 22 DAP embryo - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.695.6GSM314285tissue type: 22 DAP embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.495.2GSM314286tissue type: 22 DAP embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
2.391.5GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.391.5GSM314253tissue type: germinating seed, coleoptile - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
2.089.7GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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