Co-expression analysis

Gene ID	Ta.5839.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g05675: protein binding (HF=9e-2)
Module size	6 genes
NF	0.22
%ile	37.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	1.00	Ta.5839.1.S1_at	BJ291864	-	-	9e-2	At3g05675	protein binding	O.I.	H.G.	S.X.	Please select
0.67	86.3	1.00	TaAffx.133698.1.A1_s_at	BJ296326	-	-	1e+0	At2g43570	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.50	72.4	1.00	Ta.5839.1.S1_x_at	BJ291864	-	-	9e-2	At3g05675	protein binding	O.I.	H.G.	S.X.	Please select
0.38	54.7	1.00	Ta.15268.1.S1_x_at	M11075.1	alpha-gliadin /// alpha-gliadin /// alpha-gliadin /// pre-alpha-/beta-gliadin A-IV /// precursor protein (AA -20 to 287)	-	3e+0	At5g53590	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	1.00	Ta.23142.5.S1_x_at	CD868513	low molecular weight glutenin	-	4e-2	At2g30590	WRKY21	O.I.	H.G.	S.X.	Please select
0.09	10.4	1.00	Ta.23141.1.S1_at	BJ235767	puroindoline-a	-	2e+0	At4g29430	rps15ae (ribosomal protein S15A E)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
67.5	100.0	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
59.4	99.9	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
56.4	99.9	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
8.9	99.0	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
7.5	98.6	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.8	96.0	GSM139932	Anther mature anthers rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4	95.2	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.0	89.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
1.8	88.1	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the maize gene, Zm.6803.1.A1_a_at, orthologous to the query gene, Ta.5839.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	Zm.6803.1.A1_a_at	At3g05675	hypothetical protein LOC100273027	-	1e+0	At5g08330	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.63	81.1	Zm.19125.1.S1_at	At3g05675	hypothetical protein LOC100278829	-	2e+0	At3g21600	senescence/dehydration-associated protein-related	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.15451.1.S1_at	At3g05675	hypothetical protein LOC100192101	-	5e+0	At2g15830	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.16904.2.A1_x_at	At3g05675	-	-	6e+0	At5g57565	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.17624.1.S1_at	At3g05675	-	-	3e-1	At5g23395	-	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.18795.1.S1_at	At3g05675	hypothetical protein LOC100273526	-	2e-8	At5g11350	endonuclease/exonuclease/phosphatase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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