Co-expression analysis

Gene ID Ta.5839.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g05675: protein binding (HF=9e-2)
Module size 6 genes
NF 0.22
%ile 37.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.21.00Ta.5839.1.S1_atBJ291864--9e-2At3g05675protein bindingO.I.H.G.S.X.
0.6786.31.00TaAffx.133698.1.A1_s_atBJ296326--1e+0At2g43570chitinase, putativeO.I.H.G.S.X.
0.5072.41.00Ta.5839.1.S1_x_atBJ291864--9e-2At3g05675protein bindingO.I.H.G.S.X.
0.3854.71.00Ta.15268.1.S1_x_atM11075.1alpha-gliadin /// alpha-gliadin /// alpha-gliadin /// pre-alpha-/beta-gliadin A-IV /// precursor protein (AA -20 to 287)-3e+0At5g53590auxin-responsive family proteinO.I.H.G.S.X.
0.1314.61.00Ta.23142.5.S1_x_atCD868513low molecular weight glutenin-4e-2At2g30590WRKY21O.I.H.G.S.X.
0.0910.41.00Ta.23141.1.S1_atBJ235767puroindoline-a-2e+0At4g29430rps15ae (ribosomal protein S15A E)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
67.5100.0GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
59.499.9GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
56.499.9GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
8.999.0GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
7.598.6GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.396.7GSM314279tissue type: anthers, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.896.0GSM139932Anther mature anthers rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.495.2GSM139933Anther mature anthers rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
2.089.7GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
1.888.1GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os11g0122700, orthologous to the query gene, Ta.5839.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.9Os11g0122700At3g05675--1e+1At4g29610cytidine deaminase, putative / cytidine aminohydrolase, putativeO.I.H.G.S.X.
0.6787.2Os09g0413800At3g05675--6e+0At5g23680sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.6181.2Os02g0655000At3g05675--2e-1At3g04640glycine-rich proteinO.I.H.G.S.X.
0.6181.2Os01g0288301At3g05675--3e+0At5g26720unknown proteinO.I.H.G.S.X.
0.6181.2Os03g0583700At3g05675-Proteasome maturation factor UMP1 family protein4e-1At4g10880unknown proteinO.I.H.G.S.X.
0.6079.7Os05g0203400At3g05675-Conserved hypothetical protein3e-1At1g02405proline-rich family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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