CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.5839.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g05675: protein binding (HF=9e-2)

Module size 6 genes

NF 0.22

%ile 37.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 1.00 Ta.5839.1.S1_at BJ291864 - - 9e-2 At3g05675 protein binding O.I. H.G. S.X.
0.67 86.3 1.00 TaAffx.133698.1.A1_s_at BJ296326 - - 1e+0 At2g43570 chitinase, putative O.I. H.G. S.X.
0.50 72.4 1.00 Ta.5839.1.S1_x_at BJ291864 - - 9e-2 At3g05675 protein binding O.I. H.G. S.X.
0.38 54.7 1.00 Ta.15268.1.S1_x_at M11075.1 alpha-gliadin /// alpha-gliadin /// alpha-gliadin /// pre-alpha-/beta-gliadin A-IV /// precursor protein (AA -20 to 287) - 3e+0 At5g53590 auxin-responsive family protein O.I. H.G. S.X.
0.13 14.6 1.00 Ta.23142.5.S1_x_at CD868513 low molecular weight glutenin - 4e-2 At2g30590 WRKY21 O.I. H.G. S.X.
0.09 10.4 1.00 Ta.23141.1.S1_at BJ235767 puroindoline-a - 2e+0 At4g29430 rps15ae (ribosomal protein S15A E) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
67.5 100.0 GSM314288 tissue type: 22 DAP endosperm - rep2 GSE12508 Transcription patterns during wheat development
59.4 99.9 GSM314287 tissue type: 22 DAP endosperm - rep1 GSE12508 Transcription patterns during wheat development
56.4 99.9 GSM314289 tissue type: 22 DAP endosperm - rep3 GSE12508 Transcription patterns during wheat development
8.9 99.0 GSM314278 tissue type: anthers, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
7.5 98.6 GSM314280 tissue type: anthers, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
4.3 96.7 GSM314279 tissue type: anthers, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
3.8 96.0 GSM139932 Anther mature anthers rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4 95.2 GSM139933 Anther mature anthers rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.0 89.7 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
1.8 88.1 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g05675, orthologous to the query gene, Ta.5839.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.53 68.6 At3g05675 819735 protein binding F:protein binding;P:unknown;C:unknown;P O.I. H.G. S.X.
0.67 81.6 At4g26980 828806 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. H.G. S.X.
0.50 65.3 At5g15710 831425 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.44 57.2 At3g07930 819984 HhH-GPD base excision DNA repair family protein F:unknown;P:base-excision repair;C:unknown;MPO O.I. H.G. S.X.
0.30 32.1 At5g65540 836680 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV O.I. H.G. S.X.
0.29 30.3 At1g49350 841358 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:D-ribose metabolic process;C:cellular_component unknown;BOMFP O.I. H.G. S.X.
0.25 22.6 At5g03415 831847 DPB Encodes a homolog of the animal DP protein. DP, in animals, forms a heterodimer with E2F and plays a central role in G1/S transition in the cell division cycle. DPB has been shown to interact with non phosphorylated E2Fc; when E2Fc is phosphorylated, the formation of the E2Fc/DPB heterodimer is lost. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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