Co-expression analysis

Gene ID	Ta.5667.3.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g63230: - (HF=1e+0)
Module size	6 genes
NF	0.50
%ile	76.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.1	0.93	Ta.5667.3.S1_x_at	CA654491	-	-	1e+0	At5g63230	-	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.94	TaAffx.65450.1.S1_at	BJ245807	-	-	1e+0	At4g36990	HSF4 (HEAT SHOCK FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.95	Ta.24213.2.S1_at	BJ247108	-	-	3e-7	At1g11670	MATE efflux family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.94	Ta.28595.2.S1_x_at	CD889856	-	-	1e+0	At1g75050	-	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.95	TaAffx.95874.1.S1_at	BJ232212	-	-	1e-3	At4g30080	ARF16 (AUXIN RESPONSE FACTOR 16)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.95	TaAffx.17257.1.S1_at	CA613987	-	-	1e-5	At5g13400	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.7	99.3	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
6.4	98.2	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.2	98.1	GSM298085	Crown tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.6	97.0	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM138171	genotype C31 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.3	95.0	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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