Co-expression analysis

Gene ID Ta.5657.1.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At5g58490: cinnamoyl-CoA reductase family (HF=3e-9)
Module size 6 genes
NF 0.12
%ile 24.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5072.40.94Ta.5657.1.S1_x_atCD452733--3e-9At5g58490cinnamoyl-CoA reductase familyO.I.H.G.S.X.
0.2329.00.96Ta.20364.1.S1_atCA679058--1e+1At4g03170DNA bindingO.I.H.G.S.X.
0.2227.10.95Ta.3057.1.S1_atBJ214808--3e+0At1g04800glycine-rich proteinO.I.H.G.S.X.
0.2125.50.95Ta.13694.1.S1_a_atCA614115--6e-1At5g07430pectinesterase family proteinO.I.H.G.S.X.
0.1011.30.95Ta.6113.1.S1_a_atCA668966--3e+0At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.056.70.95Ta.664.1.S1_atCK153186--1e-8At1g11910aspartyl protease family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.099.6GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
5.697.8GSM143522Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.997.3GSM138193genotype B33 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
4.897.2GSM343682Wheat var. Kennedy_control_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
4.797.1GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.296.6GSM143520Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.296.6GSM143502Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.196.4GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
4.196.4GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.096.3GSM143507Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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