Co-expression analysis

Gene ID	Ta.5602.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g25682: cell cycle control protein-related (HF=2e-1)
Module size	10 genes
NF	0.57
%ile	83.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.58	79.2	0.96	Ta.5602.2.S1_at	CA673690	-	-	2e-1	At1g25682	cell cycle control protein-related	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.13181.2.S1_at	CD939557	-	-	1e+0	At5g25360	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	83.6	0.97	Ta.7543.1.S1_at	CK215504	-	-	3e-1	At3g63060	EDL3 (EID1-like 3)	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.98	Ta.7526.2.A1_x_at	CD454360	-	-	2e+0	At3g29580	-	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.98	Ta.7526.1.S1_at	BE412144	-	-	1e-24	At5g60620	phospholipid/glycerol acyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.97	Ta.18143.1.A1_at	BJ230756	-	-	1e+0	At1g30230	elongation factor 1-beta / EF-1-beta	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.98	Ta.4785.1.A1_at	BJ271587	-	-	4e+0	At1g35040	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.6585.1.A1_at	BQ171254	-	-	5e+0	At4g21865	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.97	Ta.7107.1.A1_at	BJ321016	-	-	1e+0	At4g17160	ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	Ta.974.1.S1_at	BE516580	-	-	2e+0	At1g74200	AtRLP16 (Receptor Like Protein 16)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	98.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.1	96.4	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.7	95.8	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.7	95.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2	94.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.8	93.6	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
2.6	92.9	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage