Co-expression analysis

Gene ID	Ta.5589.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g36890: BGLU42 (BETA GLUCOSIDASE 42) (HF=2e-8)
Module size	14 genes
NF	0.35
%ile	57.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	89.4	0.92	Ta.5589.2.S1_a_at	CK152863	-	-	2e-8	At5g36890	BGLU42 (BETA GLUCOSIDASE 42)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.95	Ta.3467.1.S1_at	CK214904	-	-	4e-18	At2g14260	PIP	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.96	Ta.16965.2.A1_x_at	CA616149	-	-	4e+0	At3g57240	BG3 (BETA-1,3-GLUCANASE 3)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.94	TaAffx.29477.1.S1_at	CA641985	-	-	3e+1	At3g19070	cell wall protein-related	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.95	Ta.3589.1.A1_at	CD373900	-	-	6e-2	At5g15050	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.94	TaAffx.2991.1.S1_at	CA653919	-	-	2e-7	At3g21650	serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.94	Ta.4861.1.A1_at	BJ321528	-	-	2e-25	At1g48310	CHR18	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.94	Ta.20732.1.S1_at	CA608124	-	-	3e+0	At4g14385	-	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.95	Ta.2408.1.S1_at	BG605197	-	-	2e+0	At1g53890	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.94	Ta.7197.1.A1_at	CK152351	RAD51A recombination protein	-	2e-13	At5g20850	ATRAD51	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.95	Ta.4793.1.S1_at	BT009509.1	-	-	1e-40	At3g57050	CBL (cystathionine beta-lyase)	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.95	Ta.24074.1.S1_at	CA730162	-	-	1e+0	At4g15000	60S ribosomal protein L27 (RPL27C)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.95	Ta.10218.2.S1_at	BJ277792	-	-	2e+0	At5g17073	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.95	Ta.10218.2.S1_x_at	BJ277792	-	-	2e+0	At5g17073	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	97.9	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.6	97.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.6	95.6	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.3	95.0	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage