Co-expression analysis

Gene ID Ta.5530.3.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g27090: - (HF=4e+0)
Module size 8 genes
NF 0.60
%ile 85.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6182.00.92Ta.5530.3.A1_atCA630457--4e+0At3g27090-O.I.H.G.S.X.
0.7188.00.93TaAffx.109318.1.S1_atCA677119--4e+0At2g14560LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)O.I.H.G.S.X.
0.6786.30.93TaAffx.15154.2.S1_s_atCA744371--9e-1At3g62030peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)O.I.H.G.S.X.
0.6786.30.93Ta.3378.2.A1_atCA666300--2e-1At5g12390FIS1B (FISSION 1B)O.I.H.G.S.X.
0.6182.00.93TaAffx.78296.1.S1_atCA734700--8e-1At5g45700NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.4464.50.93Ta.13274.2.A1_atCA613778--7e-2At5g05360unknown proteinO.I.H.G.S.X.
0.4464.50.93Ta.28190.2.S1_a_atCA654134--7e-2At5g07620protein kinase family proteinO.I.H.G.S.X.
0.4260.90.92Ta.11134.2.S1_atCA607725--1e+0At1g23770F-box family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.899.7GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
5.797.9GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.497.7GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
4.096.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.395.0GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.395.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.592.5GSM138172genotype DH95 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.492.0GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.492.0GSM138210genotype B65 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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