Co-expression analysis

Gene ID Ta.5515.1.S1_at
Gene name Calcium-dependent protein kinase
Homology with ArabidopsisSimilar to At5g66210: CPK28 (HF=4e-3)
Module size 6 genes
NF 0.27
%ile 44.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6786.30.87Ta.5515.1.S1_atCA681683Calcium-dependent protein kinase-4e-3At5g66210CPK28O.I.H.G.S.X.
0.4464.50.91Ta.5515.3.S1_atBJ245418calcium-dependent protein kinase-1e-2At4g36070CPK18O.I.H.G.S.X.
0.3142.70.90Ta.5515.1.S1_a_atCA681683calcium-dependent protein kinase-4e-3At5g66210CPK28O.I.H.G.S.X.
0.2125.50.91TaAffx.22993.1.S1_atCA741966--4e+0At2g02100LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69)O.I.H.G.S.X.
0.2125.50.91Ta.9502.1.A1_s_atBJ310376--4e-1At4g18940cyclic phosphodiesterase, putativeO.I.H.G.S.X.
0.1112.40.91TaAffx.56499.1.S1_s_atCA650261--2e+1At5g66050-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.799.7GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
15.299.6GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
14.299.5GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
13.799.5GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
6.898.4GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.998.0GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.797.1GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM324493Si+ B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
4.596.9GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.096.3GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage