Co-expression analysis

Gene ID	Ta.5509.3.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At1g17990: 12-oxophytodienoate reductase, putative (HF=1e-2)
Module size	6 genes
NF	0.24
%ile	39.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.90	Ta.5509.3.S1_x_at	CA604882	-	-	1e-2	At1g17990	12-oxophytodienoate reductase, putative	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	Ta.28719.1.A1_at	CA722261	-	-	1e+0	At5g61890	AP2 domain-containing transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.98	Ta.7147.3.S1_a_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	Ta.6082.1.S1_x_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.97	Ta.7147.2.S1_at	CK161455	-	-	9e-9	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.90	Ta.5509.1.S1_at	CA669976	-	-	1e-17	At1g76690	OPR2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.5	99.8	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
19.7	99.7	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
11.6	99.3	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
10.2	99.2	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
6.3	98.2	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.2	98.1	GSM298080	Leaf tissue of Solstice at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM298078	Leaf tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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