Co-expression analysis

Gene ID	Ta.5509.3.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g17990: 12-oxophytodienoate reductase, putative (HF=1e-2)
Module size	6 genes
NF	0.03
%ile	8.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.66	Ta.5509.3.S1_at	CA604882	-	-	1e-2	At1g17990	12-oxophytodienoate reductase, putative	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.95	Ta.1991.1.S1_at	BJ264076	cold acclimation protein WCOR410c	-	8e-4	At1g20440	COR47 (COLD-REGULATED 47)	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.86	Ta.3366.1.S1_at	CK195723	-	-	2e-8	At4g15560	CLA1 (CLOROPLASTOS ALTERADOS 1)	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.91	Ta.10572.1.S1_at	BJ258058	-	-	4e+0	At4g37240	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.95	Ta.1058.2.S1_at	BJ254771	S-adenosylmethionine decarboxylase precursor	-	3e-5	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.95	Ta.12751.1.S1_at	CK208020	-	-	3e-10	At5g49820	emb1879 (embryo defective 1879)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
46.7	99.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
5.9	98.0	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
5.3	97.6	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.1	97.5	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.1	94.5	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.221339.1.S1_at, orthologous to the query gene, Ta.5509.3.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	75.4	PtpAffx.221339.1.S1_at	At1g17990	hypothetical protein	-	2e-22	At1g76680	OPR1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.71886.2.S1_at	At1g17990	methionine sulfoxide reductase type /// methionine sulfoxide reductase type	-	1e-14	At5g07470	PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.149231.1.S1_at	At1g17990	-	-	2e-7	At5g02780	In2-1 protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.153007.1.A1_at	At1g17990	-	-	4e+1	At4g37440	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.219468.1.S1_at	At1g17990	hypothetical protein	-	3e-1	At1g76930	ATEXT4 (EXTENSIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.98284.1.S1_at	At1g17990	-	-	1e-1	At5g44150	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage