Co-expression analysis

Gene ID Ta.5509.3.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g17990: 12-oxophytodienoate reductase, putative (HF=1e-2)
Module size 6 genes
NF 0.03
%ile 8.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.66Ta.5509.3.S1_atCA604882--1e-2At1g1799012-oxophytodienoate reductase, putativeO.I.H.G.S.X.
0.034.70.95Ta.1991.1.S1_atBJ264076cold acclimation protein WCOR410c-8e-4At1g20440COR47 (COLD-REGULATED 47)O.I.H.G.S.X.
0.023.60.86Ta.3366.1.S1_atCK195723--2e-8At4g15560CLA1 (CLOROPLASTOS ALTERADOS 1)O.I.H.G.S.X.
0.023.60.91Ta.10572.1.S1_atBJ258058--4e+0At4g37240unknown proteinO.I.H.G.S.X.
0.023.60.95Ta.1058.2.S1_atBJ254771S-adenosylmethionine decarboxylase precursor-3e-5At3g02470SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)O.I.H.G.S.X.
0.012.40.95Ta.12751.1.S1_atCK208020--3e-10At5g49820emb1879 (embryo defective 1879)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
46.799.9GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
5.998.0GSM298064Crown tissue of Harnesk at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.497.7GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.397.6GSM298063Crown tissue of Harnesk at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.197.5GSM298069Leaf tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.396.7GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.395.0GSM298061Crown tissue of Harnesk at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.395.0GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
3.194.5GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.194.5GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os.15627.1.A1_at, orthologous to the query gene, Ta.5509.3.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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