CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.5509.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g76690: OPR2 (HF=1e-17)

Module size 36 genes

NF 0.37

%ile 59.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.95 99.1 0.91 Ta.5509.1.S1_at CA669976 - - 1e-17 At1g76690 OPR2 O.I. H.G. S.X.
0.56 78.6 0.94 Ta.4059.1.S1_a_at BJ263315 - - 6e-42 At3g09550 protein binding O.I. H.G. S.X.
0.52 73.7 0.95 TaAffx.19824.2.S1_s_at CA679087 - - 1e-9 At4g27020 unknown protein O.I. H.G. S.X.
0.52 73.7 0.91 TaAffx.17098.1.S1_at BQ803435 - - 3e-2 At2g45410 LBD19 (LOB DOMAIN-CONTAINING PROTEIN 19) O.I. H.G. S.X.
0.51 73.0 0.94 Ta.11699.1.A1_at BQ170617 - - 4e+0 At3g20370 meprin and TRAF homology domain-containing protein / MATH domain-containing protein O.I. H.G. S.X.
0.48 69.0 0.93 TaAffx.110862.1.S1_s_at CA652750 - - 7e-1 At2g38695 unknown protein O.I. H.G. S.X.
0.47 67.9 0.95 TaAffx.108337.1.S1_s_at CA689479 - - 9e-13 At2g30650 catalytic O.I. H.G. S.X.
0.46 66.8 0.92 Ta.10740.1.S1_x_at CK195106 - - 8e+0 At3g60770 40S ribosomal protein S13 (RPS13A) O.I. H.G. S.X.
0.46 66.8 0.93 Ta.13260.1.A1_at BJ239696 - - 4e-4 At5g62960 unknown protein O.I. H.G. S.X.
0.45 65.2 0.95 TaAffx.50947.1.S1_at CA733029 - - 2e-5 At1g71020 armadillo/beta-catenin repeat family protein / U-box domain-containing protein O.I. H.G. S.X.
0.42 60.9 0.92 TaAffx.100035.1.S1_at CA699573 - - 9e-6 At5g50210 QS (QUINOLINATE SYNTHASE) O.I. H.G. S.X.
0.40 58.4 0.94 Ta.5500.2.S1_x_at CA659092 - - 4e+0 At3g53870 40S ribosomal protein S3 (RPS3B) O.I. H.G. S.X.
0.40 58.4 0.94 Ta.11560.3.S1_at CA639569 - - 2e-5 At4g31410 unknown protein O.I. H.G. S.X.
0.39 56.1 0.93 Ta.3420.2.S1_at CA695891 - - 7e-8 At1g06310 ACX6 (ACYL-COA OXIDASE 6) O.I. H.G. S.X.
0.39 56.1 0.94 Ta.5500.2.S1_a_at CA659092 - - 4e+0 At3g53870 40S ribosomal protein S3 (RPS3B) O.I. H.G. S.X.
0.38 54.7 0.95 Ta.22677.1.S1_at CA686817 Leucine-rich repeat protein - 2e-4 At5g21090 leucine-rich repeat protein, putative O.I. H.G. S.X.
0.37 53.0 0.95 Ta.6039.2.S1_at BJ232164 - - 2e-8 At4g30490 AFG1-like ATPase family protein O.I. H.G. S.X.
0.37 53.0 0.93 Ta.4273.1.S1_at CN012883 - - 1e-4 At5g54500 FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) O.I. H.G. S.X.
0.36 51.9 0.95 TaAffx.113489.1.S1_at CA653516 - - 5e-10 At3g12800 SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B) O.I. H.G. S.X.
0.36 51.9 0.95 Ta.6750.3.S1_at CA649267 - - 1e-23 At5g65940 CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) O.I. H.G. S.X.
0.35 49.8 0.96 Ta.11338.3.S1_a_at CA647367 - - 4e+0 At3g47200 unknown protein O.I. H.G. S.X.
0.35 49.8 0.95 TaAffx.2187.1.S1_at CK211192 - - 4e-2 At3g47300 SELT (SELT-LIKE PROTEIN PRECURSOR) O.I. H.G. S.X.
0.34 48.1 0.95 Ta.5228.2.A1_a_at BJ283864 - - 2e+1 At5g38050 unknown protein O.I. H.G. S.X.
0.33 46.9 0.96 Ta.11338.1.S1_at BQ169872 - - 3e+0 At4g08593 unknown protein O.I. H.G. S.X.
0.33 46.9 0.96 Ta.6327.1.S1_at CA639936 - - 1e-2 At5g61530 small G protein family protein / RhoGAP family protein O.I. H.G. S.X.
0.33 46.9 0.93 TaAffx.119956.1.A1_at BJ244559 - - 2e+1 At5g63510 GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1) O.I. H.G. S.X.
0.31 42.7 0.95 Ta.27228.1.S1_at BT009236.1 - - 5e-2 At2g15390 FUT4 O.I. H.G. S.X.
0.31 42.7 0.96 Ta.6327.3.S1_a_at CA677321 - - 1e+0 At3g01440 oxygen evolving enhancer 3 (PsbQ) family protein O.I. H.G. S.X.
0.31 42.7 0.93 Ta.9437.2.S1_a_at CA732724 - - 6e-2 At5g43100 aspartyl protease family protein O.I. H.G. S.X.
0.28 39.2 0.94 Ta.22534.1.S1_a_at CA644825 - - 6e-3 At1g50740 unknown protein O.I. H.G. S.X.
0.25 32.1 0.93 Ta.28879.2.S1_x_at CA744010 - - 3e-3 At1g34750 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.24 30.3 0.95 Ta.7147.2.S1_at CK161455 - - 9e-9 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) O.I. H.G. S.X.
0.24 30.3 0.94 Ta.7449.1.S1_at BJ263886 - - 2e-3 At5g63740 zinc finger protein-related O.I. H.G. S.X.
0.20 24.0 0.94 Ta.28879.1.S1_a_at BJ306387 - - 5e-8 At1g22280 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.19 22.4 0.94 Ta.7474.2.S1_a_at CA603080 - - 5e-9 At2g39770 CYT1 (CYTOKINESIS DEFECTIVE 1) O.I. H.G. S.X.
0.16 18.2 0.93 Ta.1366.1.S1_at CK209068 - - 3e-6 At4g16210 ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.95	99.1	0.91	Ta.5509.1.S1_at	CA669976	-	-	1e-17	At1g76690	OPR2	O.I.	H.G.	S.X.
0.56	78.6	0.94	Ta.4059.1.S1_a_at	BJ263315	-	-	6e-42	At3g09550	protein binding	O.I.	H.G.	S.X.
0.52	73.7	0.95	TaAffx.19824.2.S1_s_at	CA679087	-	-	1e-9	At4g27020	unknown protein	O.I.	H.G.	S.X.
0.52	73.7	0.91	TaAffx.17098.1.S1_at	BQ803435	-	-	3e-2	At2g45410	LBD19 (LOB DOMAIN-CONTAINING PROTEIN 19)	O.I.	H.G.	S.X.
0.51	73.0	0.94	Ta.11699.1.A1_at	BQ170617	-	-	4e+0	At3g20370	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.
0.48	69.0	0.93	TaAffx.110862.1.S1_s_at	CA652750	-	-	7e-1	At2g38695	unknown protein	O.I.	H.G.	S.X.
0.47	67.9	0.95	TaAffx.108337.1.S1_s_at	CA689479	-	-	9e-13	At2g30650	catalytic	O.I.	H.G.	S.X.
0.46	66.8	0.92	Ta.10740.1.S1_x_at	CK195106	-	-	8e+0	At3g60770	40S ribosomal protein S13 (RPS13A)	O.I.	H.G.	S.X.
0.46	66.8	0.93	Ta.13260.1.A1_at	BJ239696	-	-	4e-4	At5g62960	unknown protein	O.I.	H.G.	S.X.
0.45	65.2	0.95	TaAffx.50947.1.S1_at	CA733029	-	-	2e-5	At1g71020	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	O.I.	H.G.	S.X.
0.42	60.9	0.92	TaAffx.100035.1.S1_at	CA699573	-	-	9e-6	At5g50210	QS (QUINOLINATE SYNTHASE)	O.I.	H.G.	S.X.
0.40	58.4	0.94	Ta.5500.2.S1_x_at	CA659092	-	-	4e+0	At3g53870	40S ribosomal protein S3 (RPS3B)	O.I.	H.G.	S.X.
0.40	58.4	0.94	Ta.11560.3.S1_at	CA639569	-	-	2e-5	At4g31410	unknown protein	O.I.	H.G.	S.X.
0.39	56.1	0.93	Ta.3420.2.S1_at	CA695891	-	-	7e-8	At1g06310	ACX6 (ACYL-COA OXIDASE 6)	O.I.	H.G.	S.X.
0.39	56.1	0.94	Ta.5500.2.S1_a_at	CA659092	-	-	4e+0	At3g53870	40S ribosomal protein S3 (RPS3B)	O.I.	H.G.	S.X.
0.38	54.7	0.95	Ta.22677.1.S1_at	CA686817	Leucine-rich repeat protein	-	2e-4	At5g21090	leucine-rich repeat protein, putative	O.I.	H.G.	S.X.
0.37	53.0	0.95	Ta.6039.2.S1_at	BJ232164	-	-	2e-8	At4g30490	AFG1-like ATPase family protein	O.I.	H.G.	S.X.
0.37	53.0	0.93	Ta.4273.1.S1_at	CN012883	-	-	1e-4	At5g54500	FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)	O.I.	H.G.	S.X.
0.36	51.9	0.95	TaAffx.113489.1.S1_at	CA653516	-	-	5e-10	At3g12800	SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B)	O.I.	H.G.	S.X.
0.36	51.9	0.95	Ta.6750.3.S1_at	CA649267	-	-	1e-23	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	O.I.	H.G.	S.X.
0.35	49.8	0.96	Ta.11338.3.S1_a_at	CA647367	-	-	4e+0	At3g47200	unknown protein	O.I.	H.G.	S.X.
0.35	49.8	0.95	TaAffx.2187.1.S1_at	CK211192	-	-	4e-2	At3g47300	SELT (SELT-LIKE PROTEIN PRECURSOR)	O.I.	H.G.	S.X.
0.34	48.1	0.95	Ta.5228.2.A1_a_at	BJ283864	-	-	2e+1	At5g38050	unknown protein	O.I.	H.G.	S.X.
0.33	46.9	0.96	Ta.11338.1.S1_at	BQ169872	-	-	3e+0	At4g08593	unknown protein	O.I.	H.G.	S.X.
0.33	46.9	0.96	Ta.6327.1.S1_at	CA639936	-	-	1e-2	At5g61530	small G protein family protein / RhoGAP family protein	O.I.	H.G.	S.X.
0.33	46.9	0.93	TaAffx.119956.1.A1_at	BJ244559	-	-	2e+1	At5g63510	GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)	O.I.	H.G.	S.X.
0.31	42.7	0.95	Ta.27228.1.S1_at	BT009236.1	-	-	5e-2	At2g15390	FUT4	O.I.	H.G.	S.X.
0.31	42.7	0.96	Ta.6327.3.S1_a_at	CA677321	-	-	1e+0	At3g01440	oxygen evolving enhancer 3 (PsbQ) family protein	O.I.	H.G.	S.X.
0.31	42.7	0.93	Ta.9437.2.S1_a_at	CA732724	-	-	6e-2	At5g43100	aspartyl protease family protein	O.I.	H.G.	S.X.
0.28	39.2	0.94	Ta.22534.1.S1_a_at	CA644825	-	-	6e-3	At1g50740	unknown protein	O.I.	H.G.	S.X.
0.25	32.1	0.93	Ta.28879.2.S1_x_at	CA744010	-	-	3e-3	At1g34750	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.
0.24	30.3	0.95	Ta.7147.2.S1_at	CK161455	-	-	9e-9	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.
0.24	30.3	0.94	Ta.7449.1.S1_at	BJ263886	-	-	2e-3	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.
0.20	24.0	0.94	Ta.28879.1.S1_a_at	BJ306387	-	-	5e-8	At1g22280	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.
0.19	22.4	0.94	Ta.7474.2.S1_a_at	CA603080	-	-	5e-9	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	O.I.	H.G.	S.X.
0.16	18.2	0.93	Ta.1366.1.S1_at	CK209068	-	-	3e-6	At4g16210	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.3 98.8 GSM324488 Si- B+ rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
8.1 98.8 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
8.0 98.8 GSM314279 tissue type: anthers, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
4.4 96.8 GSM314262 tissue type: seedling, root - rep3 GSE12508 Transcription patterns during wheat development
4.3 96.7 GSM324487 Si- B+ rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.1 96.4 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
4.1 96.4 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1 94.5 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.0 94.3 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8 93.6 GSM143517 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
8.3	98.8	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
8.1	98.8	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
8.0	98.8	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.4	96.8	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.1	96.4	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Ta.5509.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g76690: OPR2 (HF=1e-17)
Module size	36 genes
NF	0.37
%ile	59.9

Co-expression analysis

Gene ID Ta.5509.1.S1_at Gene name Homology with ArabidopsisSimilar to At1g76690: OPR2 (HF=1e-17) Module size 36 genes NF 0.37 %ile 59.9

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaVitis_viniferaZea_mays

Gene ID Ta.5509.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g76690: OPR2 (HF=1e-17)

Module size 36 genes

NF 0.37

%ile 59.9

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays