CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.5359.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g48790: mov34 family protein (HF=3e-11)

Module size 16 genes

NF 0.35

%ile 56.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.68 86.5 0.97 Ta.5359.1.S1_at BJ238105 - - 3e-11 At1g48790 mov34 family protein O.I. H.G. S.X.
0.48 69.0 0.98 Ta.13236.1.S1_at BM136267 SUSIBA2-like protein - 2e-18 At4g26640 WRKY20 O.I. H.G. S.X.
0.44 64.5 0.98 Ta.23742.1.S1_at CA668797 - - 5e-66 At5g45550 mob1/phocein family protein O.I. H.G. S.X.
0.43 62.2 0.97 Ta.3493.1.S1_at CA601491 - - 6e-7 At2g33980 atnudt22 (Arabidopsis thaliana Nudix hydrolase homolog 22) O.I. H.G. S.X.
0.42 60.9 0.98 Ta.7299.1.S1_at CK162098 - - 6e-36 At3g59920 ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2) O.I. H.G. S.X.
0.40 58.4 0.98 Ta.14353.1.S1_at BU100478 - - 5e-4 At5g52200 unknown protein O.I. H.G. S.X.
0.38 54.7 0.97 Ta.9302.1.S1_at CA604475 - - 4e-2 At4g13670 PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5) O.I. H.G. S.X.
0.38 54.7 0.98 Ta.7296.1.S1_at BJ252648 - - 4e-5 At3g45000 VPS24.2 O.I. H.G. S.X.
0.36 51.9 0.97 Ta.6777.3.A1_a_at CA605335 - - 5e-4 At4g30480 tetratricopeptide repeat (TPR)-containing protein O.I. H.G. S.X.
0.32 44.4 0.98 Ta.5312.3.S1_x_at CA638807 - - 4e+0 At2g17190 ubiquitin family protein O.I. H.G. S.X.
0.31 42.7 0.98 Ta.2528.1.S1_at CD919475 - - 3e-3 At4g15470 - O.I. H.G. S.X.
0.28 39.2 0.97 Ta.13231.1.S1_at BJ286554 vacuolar proton ATPase subunit E - 7e-35 At4g11150 TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) O.I. H.G. S.X.
0.27 35.6 0.97 Ta.1709.1.S1_x_at CK208738 - - 2e-53 At2g27600 SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) O.I. H.G. S.X.
0.25 32.1 0.97 Ta.7599.1.S1_at BJ219890 - - 4e-15 At1g60170 emb1220 (embryo defective 1220) O.I. H.G. S.X.
0.24 30.3 0.97 Ta.9637.1.S1_at BJ273485 - - 5e-1 At3g53490 unknown protein O.I. H.G. S.X.
0.16 18.2 0.98 Ta.1198.1.S1_at BJ272933 - - 1e-8 At5g59890 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.4 98.9 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.8 98.4 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
6.3 98.2 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7 97.9 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.3 96.7 GSM139928 Anther immature pollen rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.3 95.0 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2 94.8 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2 94.8 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9 94.0 GSM298083 Crown tissue of Solstice at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
2.6 92.9 GSM298084 Crown tissue of Solstice at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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