Co-expression analysis

Gene ID	Ta.5302.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g03800: SYP131 (SYNTAXIN OF PLANTS 131) (HF=6e-7)
Module size	10 genes
NF	0.47
%ile	73.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.2	0.94	Ta.5302.1.S1_at	BJ285699	-	-	6e-7	At3g03800	SYP131 (SYNTAXIN OF PLANTS 131)	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.95	Ta.5711.3.S1_x_at	CA608831	-	-	5e-7	At1g56423	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.95	TaAffx.49805.1.S1_at	BQ802274	-	-	5e+0	At4g00070	-	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.95	Ta.5418.1.S1_at	CK154298	-	-	5e-17	At1g03950	VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	Ta.5711.2.S1_x_at	CD881375	-	-	4e+0	At5g41560	-	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.96	Ta.13978.1.S1_at	BI751890	-	-	1e+0	At5g56350	pyruvate kinase, putative	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.95	Ta.5711.1.S1_at	CA684075	-	-	2e+0	At1g30670	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.96	Ta.10263.1.S1_a_at	CA703693	-	-	1e-35	At2g41560	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.96	Ta.10263.1.S1_at	CA703693	-	-	1e-35	At2g41560	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.95	Ta.22715.2.A1_at	CD873981	-	-	3e-12	At2g20840	secretory carrier membrane protein (SCAMP) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	98.6	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
6.8	98.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8	97.9	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
5.4	97.7	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM298078	Leaf tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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