Co-expression analysis

Gene ID	Ta.5239.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g58684: 40S ribosomal protein S2, putative (HF=1e-1)
Module size	6 genes
NF	0.18
%ile	32.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.4	0.95	Ta.5239.1.S1_at	BJ298392	-	-	1e-1	At1g58684	40S ribosomal protein S2, putative	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.94	Ta.5451.3.S1_a_at	CA648973	-	-	4e+0	At4g14020	rapid alkalinization factor (RALF) family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	TaAffx.111639.1.S1_at	CA636269	-	-	3e+0	At3g54200	-	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.95	TaAffx.83853.1.S1_at	CA649565	-	-	4e+0	At3g25220	FKBP15-1	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.95	Ta.5412.1.S1_at	BJ263890	-	-	8e-10	At4g05330	AGD13 (ARF-GAP domain 13)	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.95	Ta.5451.3.S1_x_at	CA648973	-	-	4e+0	At4g14020	rapid alkalinization factor (RALF) family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	96.4	GSM250918	TcLr34_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.0	94.3	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.9	94.0	GSM111189	genotype H9 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8	93.6	GSM143499	Jupateco_Lr34 (susceptible), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.7	93.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.6	92.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.5	92.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.3	91.5	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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