Co-expression analysis

Gene ID	Ta.5185.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g18590: plastocyanin-like domain-containing protein (HF=1e+0)
Module size	6 genes
NF	0.06
%ile	16.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.86	Ta.5185.1.S1_at	BJ278198	-	-	1e+0	At3g18590	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.95	TaAffx.105893.1.S1_x_at	CA728292	-	-	3e-1	At1g74890	ARR15 (RESPONSE REGULATOR 15)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.94	Ta.5023.2.A1_at	BJ311223	-	-	1e+0	At5g05090	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.94	TaAffx.105893.1.S1_at	CA728292	-	-	3e-1	At1g74890	ARR15 (RESPONSE REGULATOR 15)	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.94	TaAffx.38217.1.S1_at	BJ244494	-	-	7e+0	At5g11690	ATTIM17-3	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.93	Ta.3911.2.S1_s_at	CA604151	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.6	99.1	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
9.2	99.0	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
8.6	98.9	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
8.1	98.8	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
7.1	98.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8	98.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.5	98.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2	98.1	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
6.1	98.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8	97.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage