Co-expression analysis

Gene ID	Ta.5152.1.A1_s_at
Gene name
Homology with Arabidopsis	Similar to At1g16705: p300/CBP acetyltransferase-related protein-related (HF=5e+0)
Module size	23 genes
NF	0.45
%ile	69.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	93.6	0.97	Ta.5152.1.A1_s_at	BJ277593	-	-	5e+0	At1g16705	p300/CBP acetyltransferase-related protein-related	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.97	Ta.5152.1.A1_x_at	BJ277593	-	-	5e+0	At1g16705	p300/CBP acetyltransferase-related protein-related	O.I.	H.G.	S.X.	Please select
0.62	82.3	0.97	Ta.11208.1.S1_at	BQ169627	-	-	8e+0	At4g39340	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.97	Ta.21919.1.A1_at	CA708737	-	-	4e-4	At3g26850	-	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.97	TaAffx.50708.1.S1_at	CA736629	-	-	4e+0	At5g27290	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.97	Ta.8163.1.A1_at	CF133792	-	-	8e-5	At3g07610	IBM1 (increase in bonsai methylation 1)	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.98	Ta.7089.1.S1_at	CD872336	casein kinase-like protein	-	2e-13	At3g13670	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.97	Ta.6919.1.S1_at	BJ261320	-	-	2e-1	At1g78260	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.6588.1.A1_at	CK161154	-	-	1e-24	At5g06140	SNX1 (SORTING NEXIN 1)	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.98	TaAffx.20403.1.S1_at	CA684279	-	-	7e-1	At1g36925	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.98	Ta.6685.1.S1_at	BQ168372	-	-	7e-2	At4g33210	F-box family protein (FBL15)	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.97	Ta.6555.1.S1_at	CK208136	-	-	1e-12	At5g63610	CDKE	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.98	Ta.3448.1.S1_at	CK206881	-	-	6e-1	At3g04560	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.97	Ta.9383.1.S1_a_at	BQ483833	-	-	6e-4	At2g37160	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.98	Ta.22731.1.S1_a_at	BJ276668	-	-	9e-9	At5g55510	P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.98	Ta.28199.2.A1_at	BJ319956	-	-	1e-3	At1g65660	SMP1 (SWELLMAP 1)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.98	Ta.11728.1.S1_at	BQ170684	-	-	2e-3	At1g10310	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.98	Ta.9387.1.S1_at	BJ251341	-	-	9e-23	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.97	Ta.27032.1.S1_at	BT009616.1	-	-	6e-8	At3g09100	mRNA capping enzyme family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.97	Ta.6777.1.A1_at	CK168380	-	-	7e-4	At4g30480	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.97	Ta.6061.1.A1_at	BJ272216	-	-	8e-1	At3g29300	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.97	Ta.2438.1.S1_at	CD903064	-	-	1e+0	At1g29830	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.97	Ta.4661.1.S1_s_at	BG314545	-	-	2e-27	At5g47010	LBA1 (LOW-LEVEL BETA-AMYLASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	97.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
2.9	94.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM139932	Anther mature anthers rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.7	93.3	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6	92.9	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage