Co-expression analysis

Gene ID	Ta.5149.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g07690: unknown protein (HF=3e-1)
Module size	6 genes
NF	0.55
%ile	81.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	82.0	0.82	Ta.5149.1.A1_at	CK213896	-	-	3e-1	At1g07690	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.78	TaAffx.132281.2.S1_at	CK212051	-	-	6e+0	At1g70700	TIFY7	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.81	Ta.7716.1.S1_at	BJ322896	-	-	4e-1	At1g12665	-	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.82	Ta.7389.2.A1_x_at	CK215961	-	-	3e-1	At3g02670	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.88	TaAffx.132281.2.S1_x_at	CK212051	-	-	6e+0	At1g70700	TIFY7	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.84	TaAffx.63970.1.A1_at	CK163758	-	-	6e+0	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.7	99.8	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
22.5	99.8	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
14.1	99.5	GSM314268	tissue type: seedling, leaf - rep3	GSE12508	Transcription patterns during wheat development
9.9	99.1	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
9.3	99.0	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
9.0	99.0	GSM314267	tissue type: seedling, leaf - rep2	GSE12508	Transcription patterns during wheat development
7.8	98.7	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
6.1	98.1	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.8	97.9	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.1	97.5	GSM138188	genotype F38a developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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