Co-expression analysis

Gene ID	Ta.5139.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g19740: peptidase M28 family protein (HF=2e-1)
Module size	6 genes
NF	0.46
%ile	71.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.88	Ta.5139.1.S1_at	BT009575.1	-	-	2e-1	At5g19740	peptidase M28 family protein	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.90	Ta.9132.3.S1_s_at	CA640252	-	-	7e-1	At5g19740	peptidase M28 family protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.91	Ta.16216.1.S1_s_at	CA602710	-	-	4e+0	At3g51260	PAD1 (20s proteasome alpha subunit pad1)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.91	Ta.30706.1.S1_at	AY543532.1	expansin EXPA6	-	8e+0	At2g03090	ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.91	Ta.22897.1.A1_x_at	CA639939	-	-	3e-1	At3g06750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.91	Ta.19244.1.S1_a_at	CA649219	-	-	1e+0	At3g59960	ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.9	99.5	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.7	98.4	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.0	97.4	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.2	96.6	GSM111210	genotype B11 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.8	96.0	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM138216	genotype H9 developing seed at 5 days after anthesis, biological rep2	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.5	95.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.8	93.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.7	93.3	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage