Co-expression analysis

Gene ID	Ta.5023.2.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g05090: myb family transcription factor (HF=1e+0)
Module size	7 genes
NF	0.49
%ile	75.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	89.8	0.94	Ta.5023.2.A1_at	BJ311223	-	-	1e+0	At5g05090	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.94	TaAffx.81077.1.S1_s_at	CA732020	-	-	5e-3	At3g20900	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.94	TaAffx.7591.1.S1_at	CA656091	-	-	2e+1	Atmg01020	-	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.94	Ta.15206.1.S1_at	CA693469	-	-	3e-1	At2g22320	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.95	TaAffx.105893.1.S1_x_at	CA728292	-	-	3e-1	At1g74890	ARR15 (RESPONSE REGULATOR 15)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.94	TaAffx.36684.1.A1_at	BJ319782	-	-	2e-1	At5g14690	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.95	TaAffx.38217.1.S1_at	BJ244494	-	-	7e+0	At5g11690	ATTIM17-3	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	98.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1	97.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM250907	Tc_7dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM298053	Leaf tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.6	95.6	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
3.4	95.2	GSM143520	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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