Co-expression analysis

Gene ID Ta.497.3.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At3g23660: transport protein, putative (HF=7e-8)
Module size 29 genes
NF 0.35
%ile 56.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8192.40.90Ta.497.3.S1_x_atCA722566--7e-8At3g23660transport protein, putativeO.I.H.G.S.X.
0.6182.00.94Ta.3478.3.S1_x_atCA637826--2e-11At1g69670CUL3B (CULLIN 3B)O.I.H.G.S.X.
0.5879.20.94Ta.3083.2.A1_atBJ254365--4e+0At3g05602unknown proteinO.I.H.G.S.X.
0.5779.20.94TaAffx.34241.2.S1_x_atCA722326--4e+0At5g51960-O.I.H.G.S.X.
0.5678.60.93TaAffx.58161.1.S1_atCA621887--3e+0At5g67070RALFL34 (ralf-like 34)O.I.H.G.S.X.
0.5576.80.94Ta.14305.1.A1_atBU099616--2e+0At2g20260PSAE-2 (photosystem I subunit E-2)O.I.H.G.S.X.
0.5374.90.94TaAffx.34241.2.S1_atCA722326--4e+0At5g51960-O.I.H.G.S.X.
0.5173.00.94TaAffx.38268.1.A1_atBJ242361--1e+0At1g21326VQ motif-containing proteinO.I.H.G.S.X.
0.5072.40.92Ta.5681.1.S1_x_atCA605111--1e-4At2g41420proline-rich family proteinO.I.H.G.S.X.
0.5072.40.93Ta.14479.3.S1_x_atCA630294--7e-18At2g05830eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinO.I.H.G.S.X.
0.4969.70.94Ta.14146.3.S1_x_atCA697368--2e+1At5g24313unknown proteinO.I.H.G.S.X.
0.4767.90.94Ta.18931.2.S1_x_atCA656734--2e-11At5g47870unknown proteinO.I.H.G.S.X.
0.4767.90.94Ta.1472.1.A1_atBE430276--9e-1At1g66540cytochrome P450, putativeO.I.H.G.S.X.
0.4362.20.94TaAffx.56155.1.S1_atCA656564--1e+1At5g26070hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4058.40.94Ta.12647.3.S1_x_atCA654695--1e+0At2g33220-O.I.H.G.S.X.
0.3854.70.93TaAffx.106823.1.S1_x_atCA710938--4e+0At5g55570unknown proteinO.I.H.G.S.X.
0.3448.10.94Ta.2593.3.S1_x_atCA665053--4e-1At4g23980ARF9 (AUXIN RESPONSE FACTOR 9)O.I.H.G.S.X.
0.3244.40.93Ta.2138.2.S1_atCA632124--1e+0At1g55840SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer proteinO.I.H.G.S.X.
0.2939.20.94Ta.3203.2.S1_x_atCA621738--5e-6At1g27530-O.I.H.G.S.X.
0.2839.20.94TaAffx.57555.1.S1_atCA618738--2e+1At5g67600unknown proteinO.I.H.G.S.X.
0.2735.60.94TaAffx.8469.1.S1_atCA624919--1e+1At4g13140-O.I.H.G.S.X.
0.2430.30.95Ta.1965.1.S1_atCA634037--6e-3At4g23330eukaryotic translation initiation factor-relatedO.I.H.G.S.X.
0.2227.10.93Ta.4659.2.S1_atCA725001--4e+0At5g21060homoserine dehydrogenase family proteinO.I.H.G.S.X.
0.2024.00.95TaAffx.58638.1.S1_atCA617698--4e+0At1g12805nucleotide bindingO.I.H.G.S.X.
0.1719.80.94TaAffx.80013.1.S1_atCA704301--1e+0At4g18335unknown proteinO.I.H.G.S.X.
0.1618.20.95TaAffx.112158.1.S1_atCA626538--2e+1At3g28590unknown proteinO.I.H.G.S.X.
0.1517.10.94Ta.6893.1.A1_atBQ807133--4e-1At4g31800WRKY18O.I.H.G.S.X.
0.1415.80.94Ta.12789.2.A1_x_atCK211356--5e-9At1g77710-O.I.H.G.S.X.
0.1011.30.93Ta.29570.2.S1_a_atCA609621--2e-23At3g18820ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.499.2GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.398.2GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.597.8GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.297.5GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
5.097.4GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.596.9GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.396.7GSM298069Leaf tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.196.4GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
4.096.3GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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