Co-expression analysis

Gene ID	Ta.497.2.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At4g14160: transport protein, putative (HF=1e-7)
Module size	6 genes
NF	0.06
%ile	15.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.88	Ta.497.2.S1_x_at	CA635451	-	-	1e-7	At4g14160	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.99	Ta.14126.1.S1_at	BE429982	-	-	5e-4	At1g15270	-	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.98	Ta.27101.10.S1_x_at	AJ613323	-	-	1e-26	At5g10980	histone H3	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.98	Ta.659.6.S1_x_at	BJ282457	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.95	Ta.1905.3.S1_x_at	BJ282136	-	-	2e-2	At5g06460	ATUBA2	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.96	Ta.7416.1.A1_at	BJ265665	-	-	2e+0	At5g63530	ATFP3	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	97.6	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM111237	genotype F38b developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.4	92.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.3	91.5	GSM111185	genotype C22 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.2	91.0	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.1	90.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.0	89.7	GSM298086	Crown tissue of Solstice at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.0	89.7	GSM298085	Crown tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the grape gene, 1614615_s_at, orthologous to the query gene, Ta.497.2.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	89.7	1614615_s_at	At4g14160	-	-	4e+0	At2g04170	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.87	95.2	1608322_x_at	At4g14160	-	-	7e-1	At5g10890	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.86	95.1	1616126_at	At4g14160	-	-	8e-11	At2g38140	PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.82	93.9	1609907_x_at	At4g14160	-	-	8e+0	At5g50345	-	O.I.	H.G.	S.X.	Please select
0.79	92.7	1622826_x_at	At4g14160	-	-	9e+0	At2g04845	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.78	92.6	1615753_at	At4g14160	-	-	2e-11	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.74	91.0	1618907_x_at	At4g14160	-	-	4e+0	At5g17470	calmodulin-related protein, putative	O.I.	H.G.	S.X.	Please select
0.71	89.5	1612513_at	At4g14160	hypothetical protein LOC100250896	-	7e-49	At5g50920	CLPC1	O.I.	H.G.	S.X.	Please select
0.70	88.6	1614054_at	At4g14160	-	-	4e-47	At2g27960	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.69	88.3	1616230_x_at	At4g14160	-	-	2e+1	At5g43510	-	O.I.	H.G.	S.X.	Please select
0.67	87.9	1609380_x_at	At4g14160	-	-	8e-10	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.65	85.0	1621187_s_at	At4g14160	-	-	8e+0	At5g50345	-	O.I.	H.G.	S.X.	Please select
0.63	84.3	1609904_at	At4g14160	hypothetical protein LOC100267206	-	4e-78	At5g61410	RPE	O.I.	H.G.	S.X.	Please select
0.63	84.3	1610994_x_at	At4g14160	-	-	1e+0	At1g48530	-	O.I.	H.G.	S.X.	Please select
0.59	80.6	1620380_x_at	At4g14160	-	-	1e-1	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.57	79.8	1607300_at	At4g14160	-	-	9e-51	At2g47650	UXS4 (UDP-XYLOSE SYNTHASE 4)	O.I.	H.G.	S.X.	Please select
0.56	79.4	1620264_x_at	At4g14160	-	-	2e-1	At5g10860	CBS domain-containing protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	1618973_s_at	At4g14160	hypothetical protein LOC100267103	-	1e+0	At3g61560	reticulon family protein (RTNLB6)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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