Co-expression analysis

Gene ID Ta.497.2.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At4g14160: transport protein, putative (HF=1e-7)
Module size 6 genes
NF 0.06
%ile 15.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.88Ta.497.2.S1_x_atCA635451--1e-7At4g14160transport protein, putativeO.I.H.G.S.X.
0.1821.00.99Ta.14126.1.S1_atBE429982--5e-4At1g15270-O.I.H.G.S.X.
0.1719.80.98Ta.27101.10.S1_x_atAJ613323--1e-26At5g10980histone H3O.I.H.G.S.X.
0.1112.40.98Ta.659.6.S1_x_atBJ282457--0At1g07920elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.1112.40.95Ta.1905.3.S1_x_atBJ282136--2e-2At5g06460ATUBA2O.I.H.G.S.X.
0.012.40.96Ta.7416.1.A1_atBJ265665--2e+0At5g63530ATFP3O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.397.6GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.395.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.395.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.893.6GSM111237genotype F38b developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.492.0GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.391.5GSM111185genotype C22 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.291.0GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.190.3GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.089.7GSM298086Crown tissue of Solstice at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.089.7GSM298085Crown tissue of Solstice at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1614615_s_at, orthologous to the query gene, Ta.497.2.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7289.71614615_s_atAt4g14160--4e+0At2g04170meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.8795.21608322_x_atAt4g14160--7e-1At5g10890myosin heavy chain-relatedO.I.H.G.S.X.
0.8695.11616126_atAt4g14160--8e-11At2g38140PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4)O.I.H.G.S.X.
0.8293.91609907_x_atAt4g14160--8e+0At5g50345-O.I.H.G.S.X.
0.7992.71622826_x_atAt4g14160--9e+0At2g04845GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.7892.61615753_atAt4g14160--2e-11At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.7491.01618907_x_atAt4g14160--4e+0At5g17470calmodulin-related protein, putativeO.I.H.G.S.X.
0.7189.51612513_atAt4g14160hypothetical protein LOC100250896-7e-49At5g50920CLPC1O.I.H.G.S.X.
0.7088.61614054_atAt4g14160--4e-47At2g27960CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)O.I.H.G.S.X.
0.6988.31616230_x_atAt4g14160--2e+1At5g43510-O.I.H.G.S.X.
0.6787.91609380_x_atAt4g14160--8e-10At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.
0.6585.01621187_s_atAt4g14160--8e+0At5g50345-O.I.H.G.S.X.
0.6384.31609904_atAt4g14160hypothetical protein LOC100267206-4e-78At5g61410RPEO.I.H.G.S.X.
0.6384.31610994_x_atAt4g14160--1e+0At1g48530-O.I.H.G.S.X.
0.5980.61620380_x_atAt4g14160--1e-1At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.
0.5779.81607300_atAt4g14160--9e-51At2g47650UXS4 (UDP-XYLOSE SYNTHASE 4)O.I.H.G.S.X.
0.5679.41620264_x_atAt4g14160--2e-1At5g10860CBS domain-containing proteinO.I.H.G.S.X.
0.5679.41618973_s_atAt4g14160hypothetical protein LOC100267103-1e+0At3g61560reticulon family protein (RTNLB6)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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