Co-expression analysis

Gene ID Ta.497.2.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At4g14160: transport protein, putative (HF=1e-7)
Module size 6 genes
NF 0.06
%ile 15.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.88Ta.497.2.S1_x_atCA635451--1e-7At4g14160transport protein, putativeO.I.H.G.S.X.
0.1821.00.99Ta.14126.1.S1_atBE429982--5e-4At1g15270-O.I.H.G.S.X.
0.1719.80.98Ta.27101.10.S1_x_atAJ613323--1e-26At5g10980histone H3O.I.H.G.S.X.
0.1112.40.98Ta.659.6.S1_x_atBJ282457--0At1g07920elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.1112.40.95Ta.1905.3.S1_x_atBJ282136--2e-2At5g06460ATUBA2O.I.H.G.S.X.
0.012.40.96Ta.7416.1.A1_atBJ265665--2e+0At5g63530ATFP3O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.397.6GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.395.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.395.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.893.6GSM111237genotype F38b developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.492.0GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.391.5GSM111185genotype C22 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.291.0GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.190.3GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.089.7GSM298086Crown tissue of Solstice at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.089.7GSM298085Crown tissue of Solstice at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.5961.1.S1_at, orthologous to the query gene, Ta.497.2.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7493.8Ptp.5961.1.S1_atAt4g14160hypothetical protein-6e-63At3g23660transport protein, putativeO.I.H.G.S.X.
0.5582.2PtpAffx.3505.2.S1_a_atAt4g14160hypothetical protein-4e-27At3g52190PHF1 (PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1)O.I.H.G.S.X.
0.5380.5PtpAffx.7182.2.S1_atAt4g14160--6e+0At2g30930unknown proteinO.I.H.G.S.X.
0.5279.4PtpAffx.207111.1.S1_x_atAt4g14160hypothetical protein-2e-34At5g65000nucleotide-sugar transporter family proteinO.I.H.G.S.X.
0.5178.9PtpAffx.7210.2.A1_atAt4g14160hypothetical protein-1e-9At2g46260BTB/POZ domain-containing proteinO.I.H.G.S.X.
0.5078.6PtpAffx.113579.1.S1_s_atAt4g14160hypothetical protein-4e-31At1g28490SYP61 (SYNTAXIN OF PLANTS 61)O.I.H.G.S.X.
0.4774.6PtpAffx.13438.1.S1_s_atAt4g14160hypothetical protein-2e-96At3g28715H+-transporting two-sector ATPase, putativeO.I.H.G.S.X.
0.4471.9PtpAffx.100134.1.A1_s_atAt4g14160--1e+1At1g01250AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.4067.0PtpAffx.25116.1.A1_atAt4g14160hypothetical protein-2e-8At3g54130josephin family proteinO.I.H.G.S.X.
0.4067.0PtpAffx.43623.2.A1_a_atAt4g14160hypothetical protein-7e-5At3g03610phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.3964.6Ptp.6307.1.S1_atAt4g14160hypothetical protein-9e-6At5g16510reversibly glycosylated polypeptide, putativeO.I.H.G.S.X.
0.3863.7PtpAffx.15375.1.S1_atAt4g14160--5e-20At3g53000AtPP2-A15 (Phloem protein 2-A15)O.I.H.G.S.X.
0.3762.3Ptp.312.1.S1_a_atAt4g14160hypothetical protein-1e-4At5g05750DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.3458.3PtpAffx.202120.1.S1_x_atAt4g14160hypothetical protein-3e-83At2g35170MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-relatedO.I.H.G.S.X.
0.3458.3PtpAffx.79437.1.S1_s_atAt4g14160hypothetical protein-5e-43At2g30980ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)O.I.H.G.S.X.
0.3357.5PtpAffx.13792.1.S1_atAt4g14160hypothetical protein-4e-20At3g49390CID10O.I.H.G.S.X.
0.3153.7PtpAffx.161118.1.S1_s_atAt4g14160hypothetical protein-6e-18At4g16760ACX1 (ACYL-COA OXIDASE 1)O.I.H.G.S.X.
0.2950.5PtpAffx.23209.1.S1_atAt4g14160hypothetical protein-2e-35At4g22330ATCES1O.I.H.G.S.X.
0.2850.5PtpAffx.12284.1.A1_s_atAt4g14160hypothetical protein-6e-81At3g46060ATRAB8AO.I.H.G.S.X.
0.2645.2Ptp.5593.1.S1_atAt4g14160hypothetical protein-7e-15At4g26240unknown proteinO.I.H.G.S.X.
0.2034.6PtpAffx.4529.1.S1_atAt4g14160hypothetical protein-4e-138At5g03290isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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