Co-expression analysis

Gene ID	Ta.497.2.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At4g14160: transport protein, putative (HF=1e-7)
Module size	6 genes
NF	0.06
%ile	15.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.88	Ta.497.2.S1_x_at	CA635451	-	-	1e-7	At4g14160	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.99	Ta.14126.1.S1_at	BE429982	-	-	5e-4	At1g15270	-	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.98	Ta.27101.10.S1_x_at	AJ613323	-	-	1e-26	At5g10980	histone H3	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.98	Ta.659.6.S1_x_at	BJ282457	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.95	Ta.1905.3.S1_x_at	BJ282136	-	-	2e-2	At5g06460	ATUBA2	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.96	Ta.7416.1.A1_at	BJ265665	-	-	2e+0	At5g63530	ATFP3	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	97.6	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM111237	genotype F38b developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.4	92.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.3	91.5	GSM111185	genotype C22 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.2	91.0	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.1	90.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.0	89.7	GSM298086	Crown tissue of Solstice at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.0	89.7	GSM298085	Crown tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the soybean gene, Gma.17594.3.S1_at, orthologous to the query gene, Ta.497.2.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	82.9	Gma.17594.3.S1_at	At4g14160	-	-	2e-12	At3g23660	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.67	86.1	GmaAffx.93080.1.S1_s_at	At4g14160	-	-	2e-8	At1g62020	coatomer protein complex, subunit alpha, putative	O.I.	H.G.	S.X.	Please select
0.61	81.8	GmaAffx.80549.1.S1_at	At4g14160	-	-	4e-41	At5g16300	-	O.I.	H.G.	S.X.	Please select
0.42	59.3	GmaAffx.92307.1.S1_s_at	At4g14160	-	-	4e-9	At1g51160	synbindin, putative	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.10632.1.S1_a_at	At4g14160	-	-	5e-6	At1g77710	-	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.70227.1.S1_at	At4g14160	-	-	7e+0	Atmg00610	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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