Co-expression analysis

Gene ID Ta.497.1.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At3g23660: transport protein, putative (HF=1e-13)
Module size 6 genes
NF 0.51
%ile 77.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.98Ta.497.1.S1_x_atCK156533--1e-13At3g23660transport protein, putativeO.I.H.G.S.X.
0.5072.40.98Ta.14027.1.S1_atBQ804695--1e-2At4g24840-O.I.H.G.S.X.
0.5072.40.98Ta.497.2.S1_a_atCA635451--1e-7At4g14160transport protein, putativeO.I.H.G.S.X.
0.4058.40.98Ta.12037.1.S1_atBQ171315--2e-21At1g31780-O.I.H.G.S.X.
0.3854.70.98Ta.9455.1.S1_atCK216399--5e-23At1g11890SEC22O.I.H.G.S.X.
0.2532.10.98Ta.1604.1.S1_atCK155787--6e-8At5g63840RSW3 (RADIAL SWELLING 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.899.7GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
18.199.7GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
15.199.6GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
7.998.7GSM138169genotype B68 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
5.497.7GSM138184genotype C25 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.495.2GSM138153genotype G32 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.194.5GSM138149genotype F29 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.094.3GSM138188genotype F38a developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.994.0GSM111216genotype D15 developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.893.6GSM314269tissue type: immature inflorescence - rep1GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1615265_at, orthologous to the query gene, Ta.497.1.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8193.71615265_atAt3g23660hypothetical protein LOC100262252-2e-5At4g14160transport protein, putativeO.I.H.G.S.X.
0.5475.71620312_atAt3g23660hypothetical protein LOC100254135-7e-56At1g49040SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1)O.I.H.G.S.X.
0.4464.11615636_atAt3g23660hypothetical protein LOC100264871-5e+0At5g63150unknown proteinO.I.H.G.S.X.
0.4361.51616981_atAt3g23660phospholipase D alpha-4e-52At3g15730PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)O.I.H.G.S.X.
0.4158.71622462_atAt3g23660hypothetical protein LOC100265163-4e-23At2g14740ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)O.I.H.G.S.X.
0.4158.71620700_atAt3g23660hypothetical protein LOC100261522-4e-20At1g30230elongation factor 1-beta / EF-1-betaO.I.H.G.S.X.
0.3853.61616036_atAt3g23660hypothetical protein LOC100241363-7e-4At4g23630BTI1 (VIRB2-INTERACTING PROTEIN 1)O.I.H.G.S.X.
0.3650.71614620_atAt3g23660hypothetical protein LOC100249044-5e-37At5g37310-O.I.H.G.S.X.
0.3650.71610845_atAt3g23660hypothetical protein LOC100245365-2e+0At1g68030PHD finger protein-relatedO.I.H.G.S.X.
0.3650.7AFFX-Vvi-actin-3_c2_s_atAt3g23660actin 1-O.I.H.G.S.X.
0.3548.51606368_s_atAt3g23660actin 1-0At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.3548.51611412_atAt3g23660hypothetical protein LOC100244694-2e+0At5g37480unknown proteinO.I.H.G.S.X.
0.3446.8AFFX-Vvi-actin-3_s_atAt3g23660actin 1-O.I.H.G.S.X.
0.3446.8AFFX-Vvi-actin-3_c6_s_atAt3g23660actin 1-O.I.H.G.S.X.
0.3345.71619318_atAt3g23660hypothetical protein LOC100248394-5e+0At5g65840-O.I.H.G.S.X.
0.3345.71618063_atAt3g23660hypothetical protein LOC100259885-7e-6At4g16830nuclear RNA-binding protein (RGGA)O.I.H.G.S.X.
0.3243.11616644_atAt3g23660hypothetical protein LOC100250187-5e-34At2g29080ftsh3 (FtsH protease 3)O.I.H.G.S.X.
0.3141.31618759_atAt3g23660hypothetical protein LOC100256813-1e+0At1g76010nucleic acid bindingO.I.H.G.S.X.
0.3141.31610761_atAt3g23660hypothetical protein LOC100244127-6e-68At2g26300GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1)O.I.H.G.S.X.
0.3141.31621991_atAt3g23660hypothetical protein LOC100243393-1e-1At2g41060RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.3039.41617329_atAt3g23660hypothetical protein LOC100255368-5e-49At3g19760eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putativeO.I.H.G.S.X.
0.2937.71615084_atAt3g23660hypothetical protein LOC100252857-8e-9At1g04170EIF2 GAMMAO.I.H.G.S.X.
0.2734.01612360_atAt3g23660hypothetical protein LOC100244110-2e-152At3g28710H+-transporting two-sector ATPase, putativeO.I.H.G.S.X.
0.2327.51619414_atAt3g23660hypothetical protein LOC100241708-1e-8At4g23460beta-adaptin, putativeO.I.H.G.S.X.
0.2124.01619398_atAt3g23660hypothetical protein LOC100261913-4e-135At3g08550KOB1 (KOBITO)O.I.H.G.S.X.
0.1920.91607119_atAt3g23660hypothetical protein LOC100247980-6e-71At1g78920AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2)O.I.H.G.S.X.
0.1819.41615685_atAt3g23660hypothetical protein LOC100250471-1e+0At5g15230GASA4 (GAST1 PROTEIN HOMOLOG 4)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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