Co-expression analysis

Gene ID	Ta.497.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g23660: transport protein, putative (HF=1e-13)
Module size	6 genes
NF	0.51
%ile	77.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.98	Ta.497.1.S1_x_at	CK156533	-	-	1e-13	At3g23660	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.14027.1.S1_at	BQ804695	-	-	1e-2	At4g24840	-	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.497.2.S1_a_at	CA635451	-	-	1e-7	At4g14160	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.98	Ta.12037.1.S1_at	BQ171315	-	-	2e-21	At1g31780	-	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.98	Ta.9455.1.S1_at	CK216399	-	-	5e-23	At1g11890	SEC22	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.98	Ta.1604.1.S1_at	CK155787	-	-	6e-8	At5g63840	RSW3 (RADIAL SWELLING 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.8	99.7	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
18.1	99.7	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
15.1	99.6	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
7.9	98.7	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.4	97.7	GSM138184	genotype C25 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.4	95.2	GSM138153	genotype G32 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.1	94.5	GSM138149	genotype F29 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.0	94.3	GSM138188	genotype F38a developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9	94.0	GSM111216	genotype D15 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8	93.6	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the grape gene, 1615265_at, orthologous to the query gene, Ta.497.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	93.7	1615265_at	At3g23660	hypothetical protein LOC100262252	-	2e-5	At4g14160	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.54	75.7	1620312_at	At3g23660	hypothetical protein LOC100254135	-	7e-56	At1g49040	SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1615636_at	At3g23660	hypothetical protein LOC100264871	-	5e+0	At5g63150	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	1616981_at	At3g23660	phospholipase D alpha	-	4e-52	At3g15730	PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)	O.I.	H.G.	S.X.	Please select
0.41	58.7	1622462_at	At3g23660	hypothetical protein LOC100265163	-	4e-23	At2g14740	ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)	O.I.	H.G.	S.X.	Please select
0.41	58.7	1620700_at	At3g23660	hypothetical protein LOC100261522	-	4e-20	At1g30230	elongation factor 1-beta / EF-1-beta	O.I.	H.G.	S.X.	Please select
0.38	53.6	1616036_at	At3g23660	hypothetical protein LOC100241363	-	7e-4	At4g23630	BTI1 (VIRB2-INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.36	50.7	1614620_at	At3g23660	hypothetical protein LOC100249044	-	5e-37	At5g37310	-	O.I.	H.G.	S.X.	Please select
0.36	50.7	1610845_at	At3g23660	hypothetical protein LOC100245365	-	2e+0	At1g68030	PHD finger protein-related	O.I.	H.G.	S.X.	Please select
0.36	50.7	AFFX-Vvi-actin-3_c2_s_at	At3g23660	actin 1	-				O.I.	H.G.	S.X.	Please select
0.35	48.5	1606368_s_at	At3g23660	actin 1	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1611412_at	At3g23660	hypothetical protein LOC100244694	-	2e+0	At5g37480	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	AFFX-Vvi-actin-3_s_at	At3g23660	actin 1	-				O.I.	H.G.	S.X.	Please select
0.34	46.8	AFFX-Vvi-actin-3_c6_s_at	At3g23660	actin 1	-				O.I.	H.G.	S.X.	Please select
0.33	45.7	1619318_at	At3g23660	hypothetical protein LOC100248394	-	5e+0	At5g65840	-	O.I.	H.G.	S.X.	Please select
0.33	45.7	1618063_at	At3g23660	hypothetical protein LOC100259885	-	7e-6	At4g16830	nuclear RNA-binding protein (RGGA)	O.I.	H.G.	S.X.	Please select
0.32	43.1	1616644_at	At3g23660	hypothetical protein LOC100250187	-	5e-34	At2g29080	ftsh3 (FtsH protease 3)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1618759_at	At3g23660	hypothetical protein LOC100256813	-	1e+0	At1g76010	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.31	41.3	1610761_at	At3g23660	hypothetical protein LOC100244127	-	6e-68	At2g26300	GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1621991_at	At3g23660	hypothetical protein LOC100243393	-	1e-1	At2g41060	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1617329_at	At3g23660	hypothetical protein LOC100255368	-	5e-49	At3g19760	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.29	37.7	1615084_at	At3g23660	hypothetical protein LOC100252857	-	8e-9	At1g04170	EIF2 GAMMA	O.I.	H.G.	S.X.	Please select
0.27	34.0	1612360_at	At3g23660	hypothetical protein LOC100244110	-	2e-152	At3g28710	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please select
0.23	27.5	1619414_at	At3g23660	hypothetical protein LOC100241708	-	1e-8	At4g23460	beta-adaptin, putative	O.I.	H.G.	S.X.	Please select
0.21	24.0	1619398_at	At3g23660	hypothetical protein LOC100261913	-	4e-135	At3g08550	KOB1 (KOBITO)	O.I.	H.G.	S.X.	Please select
0.19	20.9	1607119_at	At3g23660	hypothetical protein LOC100247980	-	6e-71	At1g78920	AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2)	O.I.	H.G.	S.X.	Please select
0.18	19.4	1615685_at	At3g23660	hypothetical protein LOC100250471	-	1e+0	At5g15230	GASA4 (GAST1 PROTEIN HOMOLOG 4)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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