Co-expression analysis

Gene ID Ta.497.1.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At3g23660: transport protein, putative (HF=1e-13)
Module size 6 genes
NF 0.51
%ile 77.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.98Ta.497.1.S1_x_atCK156533--1e-13At3g23660transport protein, putativeO.I.H.G.S.X.
0.5072.40.98Ta.14027.1.S1_atBQ804695--1e-2At4g24840-O.I.H.G.S.X.
0.5072.40.98Ta.497.2.S1_a_atCA635451--1e-7At4g14160transport protein, putativeO.I.H.G.S.X.
0.4058.40.98Ta.12037.1.S1_atBQ171315--2e-21At1g31780-O.I.H.G.S.X.
0.3854.70.98Ta.9455.1.S1_atCK216399--5e-23At1g11890SEC22O.I.H.G.S.X.
0.2532.10.98Ta.1604.1.S1_atCK155787--6e-8At5g63840RSW3 (RADIAL SWELLING 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.899.7GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
18.199.7GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
15.199.6GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
7.998.7GSM138169genotype B68 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
5.497.7GSM138184genotype C25 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.495.2GSM138153genotype G32 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.194.5GSM138149genotype F29 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.094.3GSM138188genotype F38a developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.994.0GSM111216genotype D15 developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.893.6GSM314269tissue type: immature inflorescence - rep1GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.5961.1.S1_at, orthologous to the query gene, Ta.497.1.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7493.8Ptp.5961.1.S1_atAt3g23660hypothetical protein-6e-63At3g23660transport protein, putativeO.I.H.G.S.X.
0.5582.2PtpAffx.3505.2.S1_a_atAt3g23660hypothetical protein-4e-27At3g52190PHF1 (PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1)O.I.H.G.S.X.
0.5380.5PtpAffx.7182.2.S1_atAt3g23660--6e+0At2g30930unknown proteinO.I.H.G.S.X.
0.5279.4PtpAffx.207111.1.S1_x_atAt3g23660hypothetical protein-2e-34At5g65000nucleotide-sugar transporter family proteinO.I.H.G.S.X.
0.5178.9PtpAffx.7210.2.A1_atAt3g23660hypothetical protein-1e-9At2g46260BTB/POZ domain-containing proteinO.I.H.G.S.X.
0.5078.6PtpAffx.113579.1.S1_s_atAt3g23660hypothetical protein-4e-31At1g28490SYP61 (SYNTAXIN OF PLANTS 61)O.I.H.G.S.X.
0.4774.6PtpAffx.13438.1.S1_s_atAt3g23660hypothetical protein-2e-96At3g28715H+-transporting two-sector ATPase, putativeO.I.H.G.S.X.
0.4471.9PtpAffx.100134.1.A1_s_atAt3g23660--1e+1At1g01250AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.4067.0PtpAffx.25116.1.A1_atAt3g23660hypothetical protein-2e-8At3g54130josephin family proteinO.I.H.G.S.X.
0.4067.0PtpAffx.43623.2.A1_a_atAt3g23660hypothetical protein-7e-5At3g03610phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.3964.6Ptp.6307.1.S1_atAt3g23660hypothetical protein-9e-6At5g16510reversibly glycosylated polypeptide, putativeO.I.H.G.S.X.
0.3863.7PtpAffx.15375.1.S1_atAt3g23660--5e-20At3g53000AtPP2-A15 (Phloem protein 2-A15)O.I.H.G.S.X.
0.3762.3Ptp.312.1.S1_a_atAt3g23660hypothetical protein-1e-4At5g05750DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.3458.3PtpAffx.202120.1.S1_x_atAt3g23660hypothetical protein-3e-83At2g35170MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-relatedO.I.H.G.S.X.
0.3458.3PtpAffx.79437.1.S1_s_atAt3g23660hypothetical protein-5e-43At2g30980ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)O.I.H.G.S.X.
0.3357.5PtpAffx.13792.1.S1_atAt3g23660hypothetical protein-4e-20At3g49390CID10O.I.H.G.S.X.
0.3153.7PtpAffx.161118.1.S1_s_atAt3g23660hypothetical protein-6e-18At4g16760ACX1 (ACYL-COA OXIDASE 1)O.I.H.G.S.X.
0.2950.5PtpAffx.23209.1.S1_atAt3g23660hypothetical protein-2e-35At4g22330ATCES1O.I.H.G.S.X.
0.2850.5PtpAffx.12284.1.A1_s_atAt3g23660hypothetical protein-6e-81At3g46060ATRAB8AO.I.H.G.S.X.
0.2645.2Ptp.5593.1.S1_atAt3g23660hypothetical protein-7e-15At4g26240unknown proteinO.I.H.G.S.X.
0.2034.6PtpAffx.4529.1.S1_atAt3g23660hypothetical protein-4e-138At5g03290isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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