Co-expression analysis

Gene ID Ta.497.1.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At3g23660: transport protein, putative (HF=1e-13)
Module size 6 genes
NF 0.51
%ile 77.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.98Ta.497.1.S1_x_atCK156533--1e-13At3g23660transport protein, putativeO.I.H.G.S.X.
0.5072.40.98Ta.14027.1.S1_atBQ804695--1e-2At4g24840-O.I.H.G.S.X.
0.5072.40.98Ta.497.2.S1_a_atCA635451--1e-7At4g14160transport protein, putativeO.I.H.G.S.X.
0.4058.40.98Ta.12037.1.S1_atBQ171315--2e-21At1g31780-O.I.H.G.S.X.
0.3854.70.98Ta.9455.1.S1_atCK216399--5e-23At1g11890SEC22O.I.H.G.S.X.
0.2532.10.98Ta.1604.1.S1_atCK155787--6e-8At5g63840RSW3 (RADIAL SWELLING 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.899.7GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
18.199.7GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
15.199.6GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
7.998.7GSM138169genotype B68 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
5.497.7GSM138184genotype C25 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.495.2GSM138153genotype G32 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.194.5GSM138149genotype F29 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.094.3GSM138188genotype F38a developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.994.0GSM111216genotype D15 developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.893.6GSM314269tissue type: immature inflorescence - rep1GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig4761_at, orthologous to the query gene, Ta.497.1.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6581.4Contig4761_atAt3g23660--2e-8At1g05520transport protein, putativeO.I.H.G.S.X.
0.6178.7HVSMEl0014B21r2_atAt3g23660--3e+0At4g20220-O.I.H.G.S.X.
0.6077.3Contig24078_atAt3g23660--4e+0At3g27080TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3)O.I.H.G.S.X.
0.5167.5Contig956_x_atAt3g23660--2e-2At5g02380MT2B (METALLOTHIONEIN 2B)O.I.H.G.S.X.
0.5066.9Contig21846_atAt3g23660--3e-1At4g1810060S ribosomal protein L32 (RPL32A)O.I.H.G.S.X.
0.4963.7Contig17010_atAt3g23660--1e-7At2g27880AGO5 (ARGONAUTE 5)O.I.H.G.S.X.
0.4661.0Contig19407_atAt3g23660--5e-1At1g32580plastid developmental protein DAG, putativeO.I.H.G.S.X.
0.4356.4Contig17181_atAt3g23660--6e-4At5g39590-O.I.H.G.S.X.
0.4255.2Contig15685_atAt3g23660--7e-1At1g23780F-box family proteinO.I.H.G.S.X.
0.4255.2Contig17091_atAt3g23660--6e+0At4g21745-O.I.H.G.S.X.
0.4255.2Contig7115_atAt3g23660--9e-1At5g51100FSD2 (FE SUPEROXIDE DISMUTASE 2)O.I.H.G.S.X.
0.4053.1Contig15774_atAt3g23660--3e-2At5g54200WD-40 repeat family proteinO.I.H.G.S.X.
0.4053.1Contig22888_atAt3g23660--1e+0At5g27944sequence-specific DNA binding / transcription factorO.I.H.G.S.X.
0.3747.9Contig7504_atAt3g23660--1e+0At1g52825unknown proteinO.I.H.G.S.X.
0.3647.1Contig10935_atAt3g23660--1e-2At5g41130acyltransferase/ catalyticO.I.H.G.S.X.
0.3342.6Contig8149_atAt3g23660--6e+0At4g14225zinc finger (AN1-like) family proteinO.I.H.G.S.X.
0.3342.6Contig5452_atAt3g23660--9e-22At2g47250RNA helicase, putativeO.I.H.G.S.X.
0.2835.5Contig24086_atAt3g23660--2e+0At3g27950early nodule-specific protein, putativeO.I.H.G.S.X.
0.2835.5Contig6089_atAt3g23660--2e-23At3g15610transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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