Co-expression analysis

Gene ID	Ta.497.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g23660: transport protein, putative (HF=1e-13)
Module size	6 genes
NF	0.51
%ile	77.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.98	Ta.497.1.S1_x_at	CK156533	-	-	1e-13	At3g23660	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.14027.1.S1_at	BQ804695	-	-	1e-2	At4g24840	-	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.497.2.S1_a_at	CA635451	-	-	1e-7	At4g14160	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.98	Ta.12037.1.S1_at	BQ171315	-	-	2e-21	At1g31780	-	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.98	Ta.9455.1.S1_at	CK216399	-	-	5e-23	At1g11890	SEC22	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.98	Ta.1604.1.S1_at	CK155787	-	-	6e-8	At5g63840	RSW3 (RADIAL SWELLING 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.8	99.7	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
18.1	99.7	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
15.1	99.6	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
7.9	98.7	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.4	97.7	GSM138184	genotype C25 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.4	95.2	GSM138153	genotype G32 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.1	94.5	GSM138149	genotype F29 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.0	94.3	GSM138188	genotype F38a developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9	94.0	GSM111216	genotype D15 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8	93.6	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the soybean gene, Gma.17594.3.S1_at, orthologous to the query gene, Ta.497.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	82.9	Gma.17594.3.S1_at	At3g23660	-	-	2e-12	At3g23660	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.67	86.1	GmaAffx.93080.1.S1_s_at	At3g23660	-	-	2e-8	At1g62020	coatomer protein complex, subunit alpha, putative	O.I.	H.G.	S.X.	Please select
0.61	81.8	GmaAffx.80549.1.S1_at	At3g23660	-	-	4e-41	At5g16300	-	O.I.	H.G.	S.X.	Please select
0.42	59.3	GmaAffx.92307.1.S1_s_at	At3g23660	-	-	4e-9	At1g51160	synbindin, putative	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.10632.1.S1_a_at	At3g23660	-	-	5e-6	At1g77710	-	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.70227.1.S1_at	At3g23660	-	-	7e+0	Atmg00610	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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