Co-expression analysis

Gene ID Ta.497.1.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At3g23660: transport protein, putative (HF=1e-13)
Module size 6 genes
NF 0.51
%ile 77.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.98Ta.497.1.S1_x_atCK156533--1e-13At3g23660transport protein, putativeO.I.H.G.S.X.
0.5072.40.98Ta.14027.1.S1_atBQ804695--1e-2At4g24840-O.I.H.G.S.X.
0.5072.40.98Ta.497.2.S1_a_atCA635451--1e-7At4g14160transport protein, putativeO.I.H.G.S.X.
0.4058.40.98Ta.12037.1.S1_atBQ171315--2e-21At1g31780-O.I.H.G.S.X.
0.3854.70.98Ta.9455.1.S1_atCK216399--5e-23At1g11890SEC22O.I.H.G.S.X.
0.2532.10.98Ta.1604.1.S1_atCK155787--6e-8At5g63840RSW3 (RADIAL SWELLING 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.899.7GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
18.199.7GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
15.199.6GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
7.998.7GSM138169genotype B68 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
5.497.7GSM138184genotype C25 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.495.2GSM138153genotype G32 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.194.5GSM138149genotype F29 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.094.3GSM138188genotype F38a developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.994.0GSM111216genotype D15 developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.893.6GSM314269tissue type: immature inflorescence - rep1GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g23660, orthologous to the query gene, Ta.497.1.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At3g23660821946transport protein, putativeF:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOPO.I.H.G.S.X.
0.5267.4At3g04080819563ATAPY1 (APYRASE 1)Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY2 causes a complete inhibition of pollen germination.O.I.H.G.S.X.
0.3541.6At5g35730833549EXS family protein / ERD1/XPR1/SYG1 family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFPOO.I.H.G.S.X.
0.3338.1At1g34020840299transporter-relatedF:unknown;P:unknown;C:plasma membrane, membrane;PMFOBO.I.H.G.S.X.
0.3133.8At4g34450829596coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putativeF:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:chloroplast, membrane;MFOPBO.I.H.G.S.X.
0.2930.3At3g05420819707ACBP4 (ACYL-COA BINDING PROTEIN 4)Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.O.I.H.G.S.X.
0.2319.3At4g24840828587-F:molecular_function unknown;P:protein transport, Golgi organization;C:vacuole;MFOPO.I.H.G.S.X.
0.2319.3At5g36290833627unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BMOPFAO.I.H.G.S.X.
0.1710.2At4g24330828536unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MFOPBO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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