Co-expression analysis

Gene ID Ta.4881.2.A1_a_at
Gene name
Homology with ArabidopsisSimilar to At5g06450: nucleic acid binding (HF=1e+0)
Module size 8 genes
NF 0.52
%ile 78.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7589.80.97Ta.4881.2.A1_a_atBJ215436--1e+0At5g06450nucleic acid bindingO.I.H.G.S.X.
0.6182.00.97Ta.2593.2.S1_x_atBQ169061--1e-25At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.5273.70.97Ta.3955.1.A1_atBJ255753--1e+0At5g17560BolA-like family proteinO.I.H.G.S.X.
0.4666.80.98Ta.523.1.S1_atBE604675--2e-5At2g30880pleckstrin homology (PH) domain-containing proteinO.I.H.G.S.X.
0.4362.20.97Ta.6531.1.S1_a_atBJ214727--5e-1At3g17440NPSN13 (NOVEL PLANT SNARE 13)O.I.H.G.S.X.
0.4362.20.97Ta.2593.2.S1_atBQ169061--1e-25At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.3854.70.98Ta.6268.1.A1_atBJ306810--8e-2At4g32551LUG (LEUNIG)O.I.H.G.S.X.
0.2939.20.98Ta.9887.3.A1_x_atBJ239587--3e-2At5g5729060S acidic ribosomal protein P3 (RPP3B)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.9GSM314286tissue type: 22 DAP embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM314285tissue type: 22 DAP embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM314269tissue type: immature inflorescence - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.496.8GSM314284tissue type: 22 DAP embryo - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.096.3GSM314270tissue type: immature inflorescence - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.595.4GSM139914Anther pre-meiosis rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.595.4GSM298062Crown tissue of Harnesk at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.395.0GSM298059Crown tissue of Harnesk at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.194.5GSM298061Crown tissue of Harnesk at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.194.5GSM298060Crown tissue of Harnesk at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage