Co-expression analysis

Gene ID	Ta.488.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At4g09010: APX4 (ASCORBATE PEROXIDASE 4) (HF=3e+0)
Module size	6 genes
NF	0.60
%ile	85.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.97	Ta.488.1.S1_x_at	BG909285	-	-	3e+0	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.97	Ta.488.1.S1_at	BG909285	-	-	3e+0	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.488.3.S1_a_at	CA627364	-	-	4e-3	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.488.3.S1_at	CA627364	-	-	4e-3	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	Ta.11386.2.S1_a_at	AF532974.1	Ascorbate peroxidase	-	2e-10	At1g77490	TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.96	Ta.2392.1.S1_x_at	CA623973	-	-	2e+0	At3g07450	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
52.6	99.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.5	96.9	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM298077	Leaf tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM314266	tissue type: seedling, leaf - rep1	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM298080	Leaf tissue of Solstice at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM298078	Leaf tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the grape gene, 1618209_at, orthologous to the query gene, Ta.488.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1618209_at	At4g09010	-	-	3e-17	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.67	87.9	1610525_at	At4g09010	hypothetical protein LOC100260680	-	2e-15	At1g50900	-	O.I.	H.G.	S.X.	Please select
0.60	81.9	1608376_at	At4g09010	similar to ribosomal protein S17	-	3e-29	At1g48350	ribosomal protein L18 family protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	1609873_at	At4g09010	hypothetical protein LOC100247523	-	2e-69	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	O.I.	H.G.	S.X.	Please select
0.32	43.1	1621285_at	At4g09010	hypothetical protein LOC100251632	-	3e-24	At4g01310	ribosomal protein L5 family protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	1617204_at	At4g09010	hypothetical protein LOC100264070	-	2e-21	At2g33800	ribosomal protein S5 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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