CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.488.1.S1_x_at

Gene name
Homology with Arabidopsis Similar to At4g09010: APX4 (ASCORBATE PEROXIDASE 4) (HF=3e+0)

Module size 6 genes

NF 0.60

%ile 85.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.97 Ta.488.1.S1_x_at BG909285 - - 3e+0 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) O.I. H.G. S.X.
0.80 92.2 0.97 Ta.488.1.S1_at BG909285 - - 3e+0 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) O.I. H.G. S.X.
0.67 86.3 0.97 Ta.488.3.S1_a_at CA627364 - - 4e-3 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) O.I. H.G. S.X.
0.67 86.3 0.97 Ta.488.3.S1_at CA627364 - - 4e-3 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) O.I. H.G. S.X.
0.36 51.9 0.97 Ta.11386.2.S1_a_at AF532974.1 Ascorbate peroxidase - 2e-10 At1g77490 TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE) O.I. H.G. S.X.
0.31 42.7 0.96 Ta.2392.1.S1_x_at CA623973 - - 2e+0 At3g07450 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
52.6 99.9 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
4.5 96.9 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3 96.7 GSM298077 Leaf tissue of Solstice at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.2 96.6 GSM314266 tissue type: seedling, leaf - rep1 GSE12508 Transcription patterns during wheat development
3.9 96.1 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8 96.0 GSM298080 Leaf tissue of Solstice at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.5 95.4 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.5 95.4 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5 95.4 GSM298079 Leaf tissue of Solstice at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.4 95.2 GSM298078 Leaf tissue of Solstice at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the rice gene, Os04g0602100, orthologous to the query gene, Ta.488.1.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os04g0602100 At4g09010 - Haem peroxidase, plant/fungal/bacterial familyprotein 2e-10 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) O.I. H.G. S.X.
0.63 82.7 Os09g0517000 At4g09010 - Conserved hypothetical protein 3e-2 At4g18205 - O.I. H.G. S.X.
0.55 73.7 Os02g0834700 At4g09010 - Conserved hypothetical protein YfcH family protein 1e-8 At2g21280 SULA O.I. H.G. S.X.
0.47 62.3 Os08g0382400 At4g09010 - Peptidyl-prolyl cis-trans isomerase, chloroplastprecursor (EC 5.2.1.8) (40 kDa thylakoid lumen PPIase)(40 kDa thylakoid lumen rotamase) 4e-18 At3g01480 CYP38 (cyclophilin 38) O.I. H.G. S.X.
0.31 34.5 Os07g0469100 At4g09010 - Thylakoid membrane phosphoprotein 14 kDa,chloroplast precursor 7e+0 At5g25240 - O.I. H.G. S.X.
0.29 31.1 Os02g0553200 At4g09010 - Thylakoid-bound ascorbate peroxidase 2e-20 At1g77490 TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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