Co-expression analysis

Gene ID	Ta.488.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g09010: APX4 (ASCORBATE PEROXIDASE 4) (HF=3e+0)
Module size	6 genes
NF	0.69
%ile	92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.97	Ta.488.1.S1_at	BG909285	-	-	3e+0	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.97	Ta.488.1.S1_x_at	BG909285	-	-	3e+0	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.488.3.S1_a_at	CA627364	-	-	4e-3	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.488.3.S1_at	CA627364	-	-	4e-3	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.97	Ta.2402.1.S1_a_at	CA722522	-	-	7e-12	At3g54890	LHCA1	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.97	Ta.2392.1.S1_x_at	CA623973	-	-	2e+0	At3g07450	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.2	GSM298077	Leaf tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM314266	tissue type: seedling, leaf - rep1	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM298080	Leaf tissue of Solstice at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM314267	tissue type: seedling, leaf - rep2	GSE12508	Transcription patterns during wheat development
4.0	96.3	GSM298078	Leaf tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM250887	TcLr34_3dpi_mock_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM298065	Leaf tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM314268	tissue type: seedling, leaf - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the maize gene, Zm.9868.1.A1_at, orthologous to the query gene, Ta.488.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	Zm.9868.1.A1_at	At4g09010	-	-	9e-2	At3g32160	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	ZmAffx.696.1.A1_at	At4g09010	-	-	3e+0	At2g45980	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.9750.1.A1_at	At4g09010	-	-	5e+0	At1g62820	calmodulin, putative	O.I.	H.G.	S.X.	Please select
0.25	21.3	ZmAffx.401.1.A1_at	At4g09010	-	-	2e-1	At5g46030	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.18327.1.A1_at	At4g09010	-	-	4e+0	At4g26160	ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1)	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.10186.1.A1_at	At4g09010	hypothetical protein LOC100274930	-	2e+0	At5g22280	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	ZmAffx.554.1.S1_at	At4g09010	-	-	6e-1	At3g15280	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	Zm.15871.2.A1_at	At4g09010	hypothetical protein LOC100216742	-	8e-1	At2g04515	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	Zm.14405.1.S1_at	At4g09010	hypothetical protein LOC100193593 /// ubiquitin-like protein 5	-	6e-46	At3g45180	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.13	6.8	Zm.13477.1.S1_at	At4g09010	hypothetical protein LOC100193397	-	1e-12	At1g55270	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.09	4.0	Zm.8141.1.A1_at	At4g09010	hypothetical protein LOC100191434	-	4e+0	At4g35985	senescence/dehydration-associated protein-related	O.I.	H.G.	S.X.	Please select
0.09	4.0	Zm.10018.1.A1_at	At4g09010	expressed protein DH12	-	1e+0	At3g10580	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.08	3.4	Zm.16942.1.A1_at	At4g09010	-	-	8e+0	At1g53610	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	2.9	ZmAffx.406.12.S1_at	At4g09010	-	-	1e+1	At5g53030	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	2.9	Zm.4450.1.A1_at	At4g09010	-	-	4e-1	At1g02790	PGA4 (POLYGALACTURONASE 4)	O.I.	H.G.	S.X.	Please select
0.07	2.9	Zm.15475.1.S1_at	At4g09010	mitochondrial NADH ubiquinone oxidoreductase 29 kDa subunit	-	9e-9	At5g63510	GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)	O.I.	H.G.	S.X.	Please select
0.06	2.3	Zm.3247.1.A1_at	At4g09010	-	-	1e-52	At1g44900	ATP binding / DNA binding / DNA-dependent ATPase	O.I.	H.G.	S.X.	Please select
0.04	1.5	Zm.15714.1.S1_a_at	At4g09010	transglutaminase	-	7e-2	At4g33660	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	1.5	Zm.19269.1.A1_at	At4g09010	hypothetical protein LOC100275524	-	3e-1	At1g53120	RNA-binding S4 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.04	1.5	Zm.8626.1.A1_at	At4g09010	hypothetical protein LOC100274398	-	1e+0	At5g61600	ethylene-responsive element-binding family protein	O.I.	H.G.	S.X.	Please select
0.02	0.7	ZmAffx.1030.1.S1_at	At4g09010	-	-	8e-1	At2g03830	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	0.7	Zm.17157.1.A1_at	At4g09010	-	-	4e+0	At5g22970	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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