CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.488.1.S1_at

Gene name
Homology with Arabidopsis Similar to At4g09010: APX4 (ASCORBATE PEROXIDASE 4) (HF=3e+0)

Module size 6 genes

NF 0.69

%ile 92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 93.4 0.97 Ta.488.1.S1_at BG909285 - - 3e+0 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) O.I. H.G. S.X.
0.83 93.4 0.97 Ta.488.1.S1_x_at BG909285 - - 3e+0 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) O.I. H.G. S.X.
0.67 86.3 0.97 Ta.488.3.S1_a_at CA627364 - - 4e-3 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) O.I. H.G. S.X.
0.67 86.3 0.97 Ta.488.3.S1_at CA627364 - - 4e-3 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) O.I. H.G. S.X.
0.43 62.2 0.97 Ta.2402.1.S1_a_at CA722522 - - 7e-12 At3g54890 LHCA1 O.I. H.G. S.X.
0.43 62.2 0.97 Ta.2392.1.S1_x_at CA623973 - - 2e+0 At3g07450 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.8 97.2 GSM298077 Leaf tissue of Solstice at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.7 97.1 GSM314266 tissue type: seedling, leaf - rep1 GSE12508 Transcription patterns during wheat development
4.5 96.9 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0 96.3 GSM298080 Leaf tissue of Solstice at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.0 96.3 GSM314267 tissue type: seedling, leaf - rep2 GSE12508 Transcription patterns during wheat development
4.0 96.3 GSM298078 Leaf tissue of Solstice at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.9 96.1 GSM250887 TcLr34_3dpi_mock_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8 96.0 GSM298065 Leaf tissue of Paragon at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.8 96.0 GSM298079 Leaf tissue of Solstice at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.7 95.8 GSM314268 tissue type: seedling, leaf - rep3 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the grape gene, 1618209_at, orthologous to the query gene, Ta.488.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 1618209_at At4g09010 - - 3e-17 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) O.I. H.G. S.X.
0.67 87.9 1610525_at At4g09010 hypothetical protein LOC100260680 - 2e-15 At1g50900 - O.I. H.G. S.X.
0.60 81.9 1608376_at At4g09010 similar to ribosomal protein S17 - 3e-29 At1g48350 ribosomal protein L18 family protein O.I. H.G. S.X.
0.60 81.9 1609873_at At4g09010 hypothetical protein LOC100247523 - 2e-69 At1g67280 lactoylglutathione lyase, putative / glyoxalase I, putative O.I. H.G. S.X.
0.32 43.1 1621285_at At4g09010 hypothetical protein LOC100251632 - 3e-24 At4g01310 ribosomal protein L5 family protein O.I. H.G. S.X.
0.21 24.0 1617204_at At4g09010 hypothetical protein LOC100264070 - 2e-21 At2g33800 ribosomal protein S5 family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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