Co-expression analysis

Gene ID Ta.488.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g09010: APX4 (ASCORBATE PEROXIDASE 4) (HF=3e+0)
Module size 6 genes
NF 0.69
%ile 92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8393.40.97Ta.488.1.S1_atBG909285--3e+0At4g09010APX4 (ASCORBATE PEROXIDASE 4)O.I.H.G.S.X.
0.8393.40.97Ta.488.1.S1_x_atBG909285--3e+0At4g09010APX4 (ASCORBATE PEROXIDASE 4)O.I.H.G.S.X.
0.6786.30.97Ta.488.3.S1_a_atCA627364--4e-3At4g09010APX4 (ASCORBATE PEROXIDASE 4)O.I.H.G.S.X.
0.6786.30.97Ta.488.3.S1_atCA627364--4e-3At4g09010APX4 (ASCORBATE PEROXIDASE 4)O.I.H.G.S.X.
0.4362.20.97Ta.2402.1.S1_a_atCA722522--7e-12At3g54890LHCA1O.I.H.G.S.X.
0.4362.20.97Ta.2392.1.S1_x_atCA623973--2e+0At3g07450protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.897.2GSM298077Leaf tissue of Solstice at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.797.1GSM314266tissue type: seedling, leaf - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.596.9GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.096.3GSM298080Leaf tissue of Solstice at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.096.3GSM314267tissue type: seedling, leaf - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.096.3GSM298078Leaf tissue of Solstice at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.996.1GSM250887TcLr34_3dpi_mock_rep1GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.896.0GSM298065Leaf tissue of Paragon at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.896.0GSM298079Leaf tissue of Solstice at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM314268tissue type: seedling, leaf - rep3GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.90941.1.S1_s_at, orthologous to the query gene, Ta.488.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4665.5GmaAffx.90941.1.S1_s_atAt4g09010--5e-15At1g63000NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE)O.I.H.G.S.X.
0.8392.5Gma.11367.1.S1_atAt4g09010--8e-3At5g16840BPA1 (BINDINGPARTNEROFACD11 1)O.I.H.G.S.X.
0.6786.1Gma.11254.1.S1_a_atAt4g09010--9e+0At5g45040cytochrome c6 (ATC6)O.I.H.G.S.X.
0.6080.7GmaAffx.39605.1.S1_atAt4g09010--2e+0At2g41470unknown proteinO.I.H.G.S.X.
0.5576.3Gma.10862.1.S1_a_atAt4g09010--2e-88At4g32410CESA1 (CELLULOSE SYNTHASE 1)O.I.H.G.S.X.
0.5071.7Gma.11254.1.S1_x_atAt4g09010--9e+0At5g45040cytochrome c6 (ATC6)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage