Co-expression analysis

Gene ID	Ta.4580.2.S1_a_at
Gene name	calcium-dependent protein kinase
Homology with Arabidopsis	Similar to At5g12480: CPK7 (calmodulin-domain protein kinase 7) (HF=8e-14)
Module size	7 genes
NF	0.52
%ile	78.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.43	62.2	0.92	Ta.4580.2.S1_a_at	BJ268280	calcium-dependent protein kinase	-	8e-14	At5g12480	CPK7 (calmodulin-domain protein kinase 7)	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.94	Ta.4189.2.S1_a_at	CA626707	-	-	3e-1	At1g12990	glycosyl transferase family 17 protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.93	Ta.22757.1.S1_s_at	CK211700	-	-	1e-4	At1g11700	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.95	Ta.4189.1.S1_at	CK154928	-	-	1e-6	At5g14480	glycosyl transferase family 17 protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.94	Ta.28276.2.S1_x_at	AJ613933	-	-	2e+0	At1g29000	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.94	Ta.4189.2.S1_x_at	CA626707	-	-	3e-1	At1g12990	glycosyl transferase family 17 protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.93	Ta.16082.2.S1_at	CK211295	-	-	2e+0	At2g32100	OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.0	98.8	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.5	98.3	GSM143508	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.3	98.2	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.1	98.1	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.0	98.0	GSM250902	Tc_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1	97.5	GSM143509	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.7	97.1	GSM143523	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.5	96.9	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.2	96.6	GSM324485	Si- B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.2	96.6	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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