Co-expression analysis

Gene ID	Ta.4578.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g03170: FLA11 (HF=2e+0)
Module size	47 genes
NF	0.28
%ile	46.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	99.9	0.95	Ta.4578.1.S1_x_at	BJ268224	-	-	2e+0	At5g03170	FLA11	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.96	Ta.6698.1.S1_at	CK200349	-	-	2e-9	At3g50590	nucleotide binding	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.97	Ta.15839.1.S1_at	CA498341	-	-	6e+0	At5g29231	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.97	Ta.5527.1.S1_at	BT009478.1	-	-	9e-8	At3g11240	ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	Ta.14351.1.S1_at	AB090160.1	G protein beta subunit	-	2e-20	At4g34460	AGB1 (GTP BINDING PROTEIN BETA 1)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	Ta.1847.1.S1_at	CK211033	-	-	2e-13	At5g17900	-	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	Ta.23259.3.A1_a_at	CA725169	-	-	9e-1	At1g24062	-	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.97	Ta.21420.1.S1_a_at	BQ170748	-	-	9e-5	At1g05520	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.97	Ta.9488.1.S1_at	CD454985	-	-	2e-4	At4g10610	CID12	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.97	Ta.367.1.S1_at	BQ243123	-	-	4e-10	At5g51230	EMF2 (EMBRYONIC FLOWER 2)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.97	Ta.10226.1.S1_at	CD490522	-	-	3e-22	At3g58570	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.98	Ta.8121.1.S1_at	CA699077	-	-	3e+0	At5g64720	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.97	Ta.7315.1.A1_at	BJ261216	-	-	3e-1	At5g40670	PQ-loop repeat family protein / transmembrane family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.97	Ta.27072.1.S1_at	BJ274572	-	-	4e-6	At1g17760	CSTF77	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.96	TaAffx.518.1.S1_x_at	BQ802465	-	-	3e-15	At4g40040	histone H3.2	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.96	Ta.30841.1.A1_at	CN010410	-	-	4e+0	At3g10760	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.97	Ta.25808.1.S1_at	CD374029	-	-	2e+0	At3g55530	SDIR1 (SALT- AND DROUGHT-INDUCED RING FINGER1)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.97	Ta.8587.1.A1_at	BJ275072	-	-	2e-4	At3g44530	HIRA (Arabidopsis homolog of histone chaperone HIRA)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.96	TaAffx.29639.1.S1_at	BJ227621	-	-	5e+0	At5g01750	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.96	Ta.3008.2.S1_at	BJ242407	-	-	2e-11	At1g52600	signal peptidase, putative	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.97	Ta.10116.1.S1_a_at	CK194257	-	-	2e-45	At1g17470	ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.97	Ta.4226.1.A1_at	CD875106	-	-	3e+0	At1g22900	-	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.97	Ta.11736.1.A1_at	BQ170705	-	-	1e+0	At4g24950	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.97	Ta.2888.1.S1_at	CA635910	-	-	8e-4	At5g10730	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.97	Ta.27454.2.S1_a_at	BJ241826	cyclophilin	-	3e-14	At2g29960	CYP5 (CYCLOPHILIN 5)	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.97	Ta.305.1.S1_at	CA702511	-	-	2e-17	At5g38640	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.97	Ta.10139.1.S1_at	BJ309587	ethylene receptor-like protein	-	2e-41	At1g66340	ETR1 (ETHYLENE RESPONSE 1)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.97	Ta.6867.1.S1_s_at	CA722211	-	-	5e-18	At3g61050	NTMC2T4	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.98	Ta.14349.1.S1_x_at	CK161301	-	-	9e-26	At1g45000	26S proteasome regulatory complex subunit p42D, putative	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.96	Ta.1205.1.S1_at	AJ615236	-	-	2e-5	At1g57600	membrane bound O-acyl transferase (MBOAT) family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.97	TaAffx.128418.33.S1_at	BJ285701	-	-	1e+0	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.98	Ta.735.1.S1_at	CK215595	-	-	2e-66	At3g62120	tRNA synthetase class II (G, H, P and S) family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.97	Ta.8774.3.S1_x_at	BJ246621	-	-	1e-28	At3g15980	coatomer protein complex, subunit beta 2 (beta prime), putative	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.97	Ta.5934.1.S1_at	CD888662	-	-	4e-15	At2g20280	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.97	Ta.9581.1.S1_x_at	CD920981	-	-	2e+0	At4g40011	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.97	Ta.19675.1.S1_at	CA655839	-	-	8e-2	At1g80160	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.97	Ta.15308.1.S1_at	CD927486	-	-	3e+0	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.97	Ta.14174.1.S1_at	BG263414	-	-	3e-3	At1g49590	formin-binding protein-related	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.97	Ta.6597.1.S1_at	CA662353	-	-	5e-14	At1g27650	ATU2AF35A	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.96	Ta.9351.1.S1_s_at	CK197291	-	-	1e-5	At5g37475	translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.98	Ta.2136.1.S1_at	BJ320333	-	-	7e-9	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.97	TaAffx.6598.1.S1_at	CD938071	-	-	1e-19	At3g07100	protein transport protein Sec24, putative	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.97	Ta.25868.1.S1_at	CA604394	-	-	9e-9	At3g22990	LFR (LEAF AND FLOWER RELATED)	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.97	Ta.14416.2.A1_a_at	BJ271618	-	-	3e-4	At4g31180	aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.97	Ta.9301.1.S1_at	CK200112	-	-	4e-25	At1g14670	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.98	Ta.10375.1.S1_a_at	CA667255	-	-	3e-9	At1g48600	phosphoethanolamine N-methyltransferase 2, putative (NMT2)	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.96	TaAffx.128554.1.S1_s_at	CD891797	-	-	1e-18	At4g35800	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.2	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.8	97.2	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.2	96.6	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.9	96.1	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.8	96.0	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.7	93.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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