Co-expression analysis

Gene ID Ta.4185.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g10440: dehydration-responsive family protein (HF=3e-4)
Module size 6 genes
NF 0.29
%ile 47.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5072.40.92Ta.4185.2.S1_atBJ260400--3e-4At4g10440dehydration-responsive family proteinO.I.H.G.S.X.
0.3549.80.93Ta.8631.2.S1_a_atCA635564--5e-9At3g49870ATARLA1C (ADP-ribosylation factor-like A1C)O.I.H.G.S.X.
0.3346.90.91TaAffx.84729.1.S1_atCA630325--3e-1At1g10210ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1)O.I.H.G.S.X.
0.2329.00.92Ta.3932.1.S1_a_atCA685040--2e+1At5g23510unknown proteinO.I.H.G.S.X.
0.2227.10.94Ta.8433.2.S1_a_atCA645972--1e-3At2g06050OPR3 (OPDA-REDUCTASE 3)O.I.H.G.S.X.
0.1719.80.92Ta.17648.1.S1_s_atCA623067--4e-20At2g46700calcium-dependent protein kinase, putative / CDPK, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.199.8GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
23.699.8GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
19.599.7GSM314279tissue type: anthers, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
14.899.5GSM139931Anther maturea nthers rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
13.099.4GSM139932Anther mature anthers rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
12.599.4GSM139933Anther mature anthers rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
2.492.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
1.988.9GSM314275tissue type: pistil, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
1.988.9GSM138153genotype G32 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
1.888.1GSM314277tissue type: pistil, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os06g0103900, orthologous to the query gene, Ta.4185.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5573.7Os06g0103900At4g10440-Putative methyltransferase DUF248 family protein3e-10At4g10440dehydration-responsive family proteinO.I.H.G.S.X.
0.5068.0Os04g0628400At4g10440-BED finger domain containing protein4e-1At5g25310catalyticO.I.H.G.S.X.
0.4458.1Os10g0181700At4g10440-ATP-binding region, ATPase-like domain containingprotein2e+0At5g46980invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.4253.9Os10g0546200At4g10440-Conserved hypothetical protein2e-3At5g04480-O.I.H.G.S.X.
0.4051.1Os02g0523300At4g10440-Spc97/Spc98 family protein1e-4At1g80260emb1427 (embryo defective 1427)O.I.H.G.S.X.
0.3541.7Os03g0423800At4g10440-Conserved hypothetical protein3e-1At2g03070unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage