Co-expression analysis

Gene ID	Ta.4185.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g10440: dehydration-responsive family protein (HF=3e-4)
Module size	6 genes
NF	0.29
%ile	47.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.4	0.92	Ta.4185.2.S1_at	BJ260400	-	-	3e-4	At4g10440	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.93	Ta.8631.2.S1_a_at	CA635564	-	-	5e-9	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.91	TaAffx.84729.1.S1_at	CA630325	-	-	3e-1	At1g10210	ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.92	Ta.3932.1.S1_a_at	CA685040	-	-	2e+1	At5g23510	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.94	Ta.8433.2.S1_a_at	CA645972	-	-	1e-3	At2g06050	OPR3 (OPDA-REDUCTASE 3)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.92	Ta.17648.1.S1_s_at	CA623067	-	-	4e-20	At2g46700	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
25.1	99.8	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
23.6	99.8	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
19.5	99.7	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
14.8	99.5	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
13.0	99.4	GSM139932	Anther mature anthers rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
12.5	99.4	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.4	92.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
1.9	88.9	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
1.9	88.9	GSM138153	genotype G32 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
1.8	88.1	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the barley gene, Contig8454_at, orthologous to the query gene, Ta.4185.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	Contig8454_at	At4g10440	-	-	2e-14	At1g33170	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig13507_at	At4g10440	-	-	2e+0	At4g24370	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig19986_at	At4g10440	-	-	7e-15	At3g11710	ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1)	O.I.	H.G.	S.X.	Please select
0.07	5.8	Contig15807_at	At4g10440	-	-	2e-9	At1g79610	sodium proton exchanger, putative (NHX6)	O.I.	H.G.	S.X.	Please select
0.03	2.6	Contig14462_at	At4g10440	-	-	1e+0	At4g00670	DNA binding	O.I.	H.G.	S.X.	Please select
0.02	1.8	Contig1336_at	At4g10440	-	-	6e-68	At3g56800	CAM3 (CALMODULIN 3)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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