CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.4185.2.S1_at

Gene name
Homology with Arabidopsis Similar to At4g10440: dehydration-responsive family protein (HF=3e-4)

Module size 6 genes

NF 0.29

%ile 47.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 72.4 0.92 Ta.4185.2.S1_at BJ260400 - - 3e-4 At4g10440 dehydration-responsive family protein O.I. H.G. S.X.
0.35 49.8 0.93 Ta.8631.2.S1_a_at CA635564 - - 5e-9 At3g49870 ATARLA1C (ADP-ribosylation factor-like A1C) O.I. H.G. S.X.
0.33 46.9 0.91 TaAffx.84729.1.S1_at CA630325 - - 3e-1 At1g10210 ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) O.I. H.G. S.X.
0.23 29.0 0.92 Ta.3932.1.S1_a_at CA685040 - - 2e+1 At5g23510 unknown protein O.I. H.G. S.X.
0.22 27.1 0.94 Ta.8433.2.S1_a_at CA645972 - - 1e-3 At2g06050 OPR3 (OPDA-REDUCTASE 3) O.I. H.G. S.X.
0.17 19.8 0.92 Ta.17648.1.S1_s_at CA623067 - - 4e-20 At2g46700 calcium-dependent protein kinase, putative / CDPK, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.1 99.8 GSM314278 tissue type: anthers, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
23.6 99.8 GSM314280 tissue type: anthers, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
19.5 99.7 GSM314279 tissue type: anthers, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
14.8 99.5 GSM139931 Anther maturea nthers rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
13.0 99.4 GSM139932 Anther mature anthers rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
12.5 99.4 GSM139933 Anther mature anthers rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.4 92.0 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
1.9 88.9 GSM314275 tissue type: pistil, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
1.9 88.9 GSM138153 genotype G32 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
1.8 88.1 GSM314277 tissue type: pistil, before anthesis - rep3 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the soybean gene, Gma.4277.2.S1_a_at, orthologous to the query gene, Ta.4185.2.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.76 89.7 Gma.4277.2.S1_a_at At4g10440 - - 2e-51 At1g26850 dehydration-responsive family protein O.I. H.G. S.X.
0.40 57.1 Gma.12509.1.S1_at At4g10440 - - 2e-44 At3g19340 - O.I. H.G. S.X.
0.29 39.0 Gma.7226.3.S1_at At4g10440 - - 3e-12 At2g18250 ATCOAD (4-phosphopantetheine adenylyltransferase) O.I. H.G. S.X.
0.19 23.7 Gma.2451.1.S1_at At4g10440 - - 8e-13 At1g78660 gamma-glutamyl hydrolase, putative / gamma-Glu-X carboxypeptidase, putative / conjugase, putative O.I. H.G. S.X.
0.15 18.7 Gma.8288.1.S1_at At4g10440 - - 6e-29 At3g03380 DegP7 (DegP protease 7) O.I. H.G. S.X.
0.09 12.0 GmaAffx.86299.1.S1_at At4g10440 - - 1e-11 At1g05640 ankyrin repeat family protein O.I. H.G. S.X.
0.07 10.2 GmaAffx.24077.1.S1_at At4g10440 - - 1e-3 At3g13670 protein kinase family protein O.I. H.G. S.X.
0.05 8.0 Gma.14109.1.S1_at At4g10440 - - 1e+0 At1g05070 unknown protein O.I. H.G. S.X.
0.05 8.0 GmaAffx.84527.1.S1_at At4g10440 - - 3e-8 At2g26140 ftsh4 (FtsH protease 4) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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