Co-expression analysis

Gene ID Ta.408.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g22040: - (HF=4e+0)
Module size 7 genes
NF 0.44
%ile 69.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6081.00.89Ta.408.2.S1_atBG909972--4e+0At5g22040-O.I.H.G.S.X.
0.6383.10.80Ta.408.1.A1_atBG905348--2e+0At1g06500unknown proteinO.I.H.G.S.X.
0.6081.00.91TaAffx.32049.1.S1_atCA602314--1e+0At1g32980subtilisin-like serine protease-relatedO.I.H.G.S.X.
0.6081.00.92Ta.408.3.S1_atBG906873--7e-3At1g32950subtilase family proteinO.I.H.G.S.X.
0.3346.90.87Ta.27457.6.S1_x_atBJ286831--1e-4At5g02380MT2B (METALLOTHIONEIN 2B)O.I.H.G.S.X.
0.2227.10.88Ta.27457.8.S1_x_atBJ264173--6e-12At3g09390MT2A (METALLOTHIONEIN 2A)O.I.H.G.S.X.
0.1821.00.87Ta.26996.1.A1_atCD454143--2e+0At4g24026unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.699.5GSM314279tissue type: anthers, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
13.299.5GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
12.099.4GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.998.4GSM298072Crown tissue of Paragon at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.698.3GSM298085Crown tissue of Solstice at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.398.2GSM314272tissue type: floral bracts, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.198.1GSM139931Anther maturea nthers rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
5.897.9GSM298060Crown tissue of Harnesk at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.897.9GSM298076Crown tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.797.9GSM298075Crown tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, HV_CEb0006L06r2_at, orthologous to the query gene, Ta.408.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6784.7HV_CEb0006L06r2_atAt5g22040--7e-2At5g67450AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1)O.I.H.G.S.X.
0.7388.7Contig11287_s_atAt5g22040--1e+0At5g15960KIN1O.I.H.G.S.X.
0.6784.7Contig16253_atAt5g22040--7e+0At5g48515-O.I.H.G.S.X.
0.5369.7Contig20219_atAt5g22040--1e-2At3g24770CLE41 (CLAVATA3/ESR-RELATED 41)O.I.H.G.S.X.
0.5066.9Contig10972_atAt5g22040--1e-5At1g32500ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)O.I.H.G.S.X.
0.3342.6Contig18431_atAt5g22040--9e-2At1g78530protein kinase family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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