Co-expression analysis

Gene ID	Ta.4072.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g42140: VQ motif-containing protein (HF=1e+0)
Module size	6 genes
NF	0.89
%ile	99.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.99	Ta.4072.1.A1_at	BJ264536	-	-	1e+0	At2g42140	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.99	Ta.4141.1.A1_at	BJ265452	-	-	1e-1	At5g10480	PAS2 (PASTICCINO 2)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.99	TaAffx.119923.1.A1_at	BJ251625	-	-	4e+0	At2g15500	-	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.99	Ta.9165.1.S1_at	BQ169924	-	-	1e-1	At5g10480	PAS2 (PASTICCINO 2)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.99	Ta.11392.1.A1_at	BJ265829	-	-	2e-2	At5g49070	KCS21 (3-KETOACYL-COA SYNTHASE 21)	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.99	Ta.8284.2.A1_x_at	BQ170665	-	-	2e+0	At1g44990	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
31.4	99.9	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
16.4	99.6	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
15.4	99.6	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
14.9	99.5	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.4	99.1	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
8.7	98.9	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.6	98.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.8	98.7	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.7	98.7	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.5	98.6	GSM250912	TcLr34_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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