CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.4062.1.S1_x_at

Gene name
Homology with Arabidopsis Similar to At4g38420: sks9 (SKU5 Similar 9) (HF=2e-1)

Module size 7 genes

NF 0.50

%ile 75.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.40 58.4 0.97 Ta.4062.1.S1_x_at CA703978 - - 2e-1 At4g38420 sks9 (SKU5 Similar 9) O.I. H.G. S.X.
0.52 73.7 0.97 Ta.214.2.A1_at BJ231272 - - 1e-131 At5g12250 TUB6 (BETA-6 TUBULIN) O.I. H.G. S.X.
0.50 72.4 0.97 Ta.1305.1.S1_x_at CK154793 - - 2e-65 At1g13950 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) O.I. H.G. S.X.
0.50 72.4 0.97 Ta.1305.1.S1_a_at CK154793 - - 2e-65 At1g13950 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) O.I. H.G. S.X.
0.48 69.0 0.97 Ta.214.2.A1_x_at BJ231272 - - 1e-131 At5g12250 TUB6 (BETA-6 TUBULIN) O.I. H.G. S.X.
0.44 64.5 0.99 Ta.28022.2.A1_at BJ309684 - - 1e-47 At5g12250 TUB6 (BETA-6 TUBULIN) O.I. H.G. S.X.
0.40 58.4 0.97 Ta.9534.1.A1_at BQ161680 - - 5e-11 At3g15380 choline transporter-related O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.2 96.6 GSM139923 Anther telophaseI-telophaseII rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.9 96.1 GSM139924 Anther telophaseI-telophaseII rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.9 96.1 GSM139927 Anther tetrads rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5 95.4 GSM139922 Anther telophaseI-telophaseII rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4 95.2 GSM139925 Anther tetrads rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.3 95.0 GSM139917 Anther leptotene-pachytene rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.3 95.0 GSM139914 Anther pre-meiosis rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2 94.8 GSM139916 Anther leptotene-pachytene rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2 94.8 GSM139918 Anther leptotene-pachytene rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2 94.8 GSM139915 Anther pre-meiosis rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the grape gene, 1616958_s_at, orthologous to the query gene, Ta.4062.1.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 83.2 1616958_s_at At4g38420 hypothetical protein LOC100248073 - 1e-3 Atmg00840 - O.I. H.G. S.X.
0.56 79.4 1621456_at At4g38420 hypothetical protein LOC100252628 - 5e-2 At2g36530 LOS2 O.I. H.G. S.X.
0.46 66.5 1614513_at At4g38420 hypothetical protein LOC100250402 - 2e-1 At2g03550 hydrolase O.I. H.G. S.X.
0.43 61.5 1612134_at At4g38420 similar to anthocyanidin reductase - 6e-3 At2g02400 cinnamoyl-CoA reductase family O.I. H.G. S.X.
0.30 39.4 1614131_at At4g38420 hypothetical protein LOC100247551 - 6e-2 At2g36760 UGT73C2 (UDP-glucosyl transferase 73C2) O.I. H.G. S.X.
0.27 34.0 1607564_at At4g38420 UPF0497 membrane protein 4 - 1e+1 At5g41530 - O.I. H.G. S.X.
0.23 27.5 1607732_at At4g38420 chalcone synthase - 7e-60 At5g13930 TT4 (TRANSPARENT TESTA 4) O.I. H.G. S.X.
0.21 24.0 1611306_at At4g38420 hypothetical protein LOC100245465 - 2e-6 At5g04630 CYP77A9 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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