Co-expression analysis

Gene ID	Ta.4062.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At4g38420: sks9 (SKU5 Similar 9) (HF=2e-1)
Module size	7 genes
NF	0.50
%ile	75.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	58.4	0.97	Ta.4062.1.S1_x_at	CA703978	-	-	2e-1	At4g38420	sks9 (SKU5 Similar 9)	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.97	Ta.214.2.A1_at	BJ231272	-	-	1e-131	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.1305.1.S1_x_at	CK154793	-	-	2e-65	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.1305.1.S1_a_at	CK154793	-	-	2e-65	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.97	Ta.214.2.A1_x_at	BJ231272	-	-	1e-131	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.99	Ta.28022.2.A1_at	BJ309684	-	-	1e-47	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.9534.1.A1_at	BQ161680	-	-	5e-11	At3g15380	choline transporter-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	96.6	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.9	96.1	GSM139924	Anther telophaseI-telophaseII rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.9	96.1	GSM139927	Anther tetrads rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM139922	Anther telophaseI-telophaseII rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4	95.2	GSM139925	Anther tetrads rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.3	95.0	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.3	95.0	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2	94.8	GSM139916	Anther leptotene-pachytene rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2	94.8	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2	94.8	GSM139915	Anther pre-meiosis rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the barley gene, Contig21006_at, orthologous to the query gene, Ta.4062.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig21006_at	At4g38420	-	-	6e-3	Atmg00820	-	O.I.	H.G.	S.X.	Please select
0.73	88.7	Contig4483_at	At4g38420	-	-	2e+1	At5g41520	40S ribosomal protein S10 (RPS10B)	O.I.	H.G.	S.X.	Please select
0.73	88.7	Contig18777_at	At4g38420	-	-	5e-1	At3g45275	-	O.I.	H.G.	S.X.	Please select
0.61	78.7	Contig12785_at	At4g38420	fatty acid hydroperoxide lyase	-	6e+0	At4g18280	glycine-rich cell wall protein-related	O.I.	H.G.	S.X.	Please select
0.56	74.3	Contig4483_s_at	At4g38420	-	-	2e+1	At5g41520	40S ribosomal protein S10 (RPS10B)	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig20142_at	At4g38420	-	-	3e+0	At1g35430	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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