Co-expression analysis

Gene ID Ta.4027.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g46530: ARF11 (AUXIN RESPONSE FACTOR 11) (HF=7e-3)
Module size 6 genes
NF 0.28
%ile 46.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.2227.10.79Ta.4027.2.S1_atBJ257188--7e-3At2g46530ARF11 (AUXIN RESPONSE FACTOR 11)O.I.H.G.S.X.
0.5072.40.90Ta.1213.1.A1_x_atBE420365--4e+0At1g52440-O.I.H.G.S.X.
0.3142.70.92Ta.6350.3.S1_a_atBJ235492calcium-dependent protein kinase /// calcium-dependent protein kinase-3e-7At1g35670ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)O.I.H.G.S.X.
0.3040.90.85TaAffx.92417.1.S1_atBJ267255--2e-1At5g09980PROPEP4 (Elicitor peptide 4 precursor)O.I.H.G.S.X.
0.2227.10.89TaAffx.105927.1.S1_atCA727689--4e+0At5g54800GPT1O.I.H.G.S.X.
0.2227.10.91Ta.15929.2.S1_atCA501533--4e-3At5g59030COPT1 (copper transporter 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.499.8GSM314277tissue type: pistil, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
21.999.8GSM314276tissue type: pistil, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
19.699.7GSM314275tissue type: pistil, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.196.4GSM139927Anther tetrads rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.395.0GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.094.3GSM314273tissue type: floral bracts, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.094.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.994.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.793.3GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
2.692.9GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage