Co-expression analysis

Gene ID	Ta.4018.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g37540: short-chain dehydrogenase/reductase (SDR) family protein (HF=7e-4)
Module size	6 genes
NF	0.44
%ile	69.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.90	Ta.4018.1.S1_at	CD888469	-	-	7e-4	At2g37540	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.91	Ta.12323.1.A1_at	BQ172096	-	-	6e+0	Atcg00050	-	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.92	Ta.28109.1.A1_at	CA617283	-	-	8e-2	At4g23430	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.89	TaAffx.64816.1.A1_at	BJ274338	-	-	4e+0	At2g33800	ribosomal protein S5 family protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.91	Ta.7871.3.S1_a_at	CA636480	-	-	7e-1	At1g70470	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.90	AFFX-Tae-r2-Bs-lys-5_at	AFFX-Tae-r2-Bs-lys-5	-	-			-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	97.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM139925	Anther tetrads rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.9	96.1	GSM139927	Anther tetrads rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM111185	genotype C22 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.0	94.3	GSM298087	Crown tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.8	93.6	GSM298088	Crown tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the maize gene, Zm.19227.1.S1_at, orthologous to the query gene, Ta.4018.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	96.7	Zm.19227.1.S1_at	At2g37540	-	-	2e-7	At5g02540	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.18244.1.S1_at	At2g37540	-	-	3e+0	At1g24260	SEP3 (SEPALLATA3)	O.I.	H.G.	S.X.	Please select
0.52	67.3	Zm.2631.1.S1_at	At2g37540	hypothetical protein LOC100191885	-	5e-5	At2g21730	CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)	O.I.	H.G.	S.X.	Please select
0.51	66.4	Zm.9542.1.A1_at	At2g37540	hypothetical protein LOC100192045	-	3e-16	At4g16170	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.8321.1.S1_at	At2g37540	calcium-dependent protein kinase, isoform AK1	-	3e+0	At5g61350	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.18541.1.S1_at	At2g37540	hypothetical protein ache	-	3e-3	At3g26430	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.17650.1.A1_at	At2g37540	prolyl 4-hydroxylase	-	6e-4	At2g23096	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.11551.1.A1_at	At2g37540	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imi dazole-4-carboxamide isomerase	-	4e-1	At4g17960	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.1240.1.A1_at	At2g37540	hypothetical protein LOC100274890	-	6e-3	At3g29034	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.3780.3.S1_at	At2g37540	-	-	2e+0	At1g29720	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.19212.1.S1_at	At2g37540	-	-	1e-1	At1g06160	ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.17192.1.A1_at	At2g37540	-	-	5e+0	At2g22520	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.9828.1.A1_at	At2g37540	zinc finger protein 7	-	3e-1	At2g20260	PSAE-2 (photosystem I subunit E-2)	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.9583.1.A1_at	At2g37540	-	-	1e+0	At4g13170	60S ribosomal protein L13A (RPL13aC)	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.478.1.A1_at	At2g37540	CRS2	-	2e-7	At5g16140	peptidyl-tRNA hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.18946.1.A1_at	At2g37540	hypothetical protein LOC100278262	-	1e+0	At1g69660	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.10872.1.A1_at	At2g37540	-	-	1e-8	At1g59990	DEAD/DEAH box helicase, putative (RH22)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.14324.1.A1_at	At2g37540	ribonucleoside-diphosphate reductase small chain	-	5e-26	At3g27060	TSO2 (TSO meaning 'ugly' in Chinese)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.7564.1.A1_at	At2g37540	-	-	4e-1	At3g59060	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.19300.1.S1_at	At2g37540	DNA repair protein RAD51	-	3e+0	At2g45280	ATRAD51C	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.4420.1.S1_at	At2g37540	hypothetical protein LOC100273293	-	4e-15	At3g13450	DIN4 (DARK INDUCIBLE 4)	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.9989.1.A1_at	At2g37540	DNA binding protein	-	5e+0	At5g03090	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.12993.1.A1_at	At2g37540	hypothetical protein LOC100273862	-	3e-2	At3g04380	SUVR4	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.17565.1.A1_at	At2g37540	hypothetical protein LOC100279752	-	1e+0	At1g52855	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.9506.1.A1_at	At2g37540	-	-	9e-2	At2g41230	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.16705.1.S1_at	At2g37540	-	-	3e-1	At1g16430	surfeit locus protein 5 family protein / SURF5 family protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.6454.1.A1_at	At2g37540	PP1/PP2A phosphatases pleiotropic regulator PRL1	-	9e-29	At4g15900	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.326.1.S1_at	At2g37540	response regulator 7	-	3e+0	At5g41761	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.3775.1.A1_at	At2g37540	chaperonin	-	3e-5	At1g14980	CPN10 (CHAPERONIN 10)	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.18825.1.A1_at	At2g37540	hypothetical protein LOC100194340	-	8e+0	At3g17675	copper ion binding / electron carrier	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.2181.1.S1_at	At2g37540	-	-	9e-1	At2g10602	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.7611.2.A1_at	At2g37540	-	-	2e-3	At1g49400	emb1129 (embryo defective 1129)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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